About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4824586
Gene symbol: Epha7
Gene name: Eph receptor A7
Probe: MGC clone 14056
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_008884_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: eyelid Strong Regionally restricted euxassay_008884_01
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_008884_01
Specimen euxassay_008884_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: eyelid Strong Regionally restricted euxassay_008884_02
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_008884_02
Specimen euxassay_008884_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_008884_03
TS23: eyelid Strong Regionally restricted euxassay_008884_03
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_008884_03
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_008884_03
Specimen euxassay_008884_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_008884_04
TS23: eyelid Strong Regionally restricted euxassay_008884_04
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_008884_04
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_008884_04
Specimen euxassay_008884_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_008884_05
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_008884_05
TS23: saccule Strong Regionally restricted euxassay_008884_05
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_008884_05
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_008884_05
TS23: pons mantle layer Moderate Regionally restricted euxassay_008884_05
Specimen euxassay_008884_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_008884_06
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_008884_06
TS23: saccule Strong Regionally restricted euxassay_008884_06
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_008884_06
TS23: midbrain mantle layer Strong Regionally restricted euxassay_008884_06
TS23: pons mantle layer Moderate Regionally restricted euxassay_008884_06
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_008884_06
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008884_06
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_008884_06
Specimen euxassay_008884_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_008884_07
TS23: metanephros Strong Regionally restricted euxassay_008884_07
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_008884_07
TS23: lower jaw molar Moderate Regionally restricted euxassay_008884_07
TS23: saccule Strong Regionally restricted euxassay_008884_07
TS23: midbrain mantle layer Strong Regionally restricted euxassay_008884_07
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_008884_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_008884_07
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_008884_07
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008884_07
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_008884_07
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_008884_07
Specimen euxassay_008884_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_008884_08
TS23: metanephros Moderate Regionally restricted euxassay_008884_08
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_008884_08
TS23: upper jaw molar Moderate Regionally restricted euxassay_008884_08
TS23: lower jaw molar Moderate Regionally restricted euxassay_008884_08
TS23: saccule Strong Regionally restricted euxassay_008884_08
TS23: midbrain mantle layer Strong Regionally restricted euxassay_008884_08
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_008884_08
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_008884_08
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_008884_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008884_08
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_008884_08
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_008884_08
TS23: pons mantle layer Moderate Regionally restricted euxassay_008884_08
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_008884_08
Specimen euxassay_008884_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_008884_09
TS23: metanephros Weak Regionally restricted euxassay_008884_09
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_008884_09
TS23: lower lip Moderate Regionally restricted euxassay_008884_09
TS23: upper lip Moderate Regionally restricted euxassay_008884_09
TS23: hindlimb digit 1 phalanx Strong Regionally restricted euxassay_008884_09
TS23: hindlimb digit 2 phalanx Strong Regionally restricted euxassay_008884_09
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_008884_09
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_008884_09
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_008884_09
TS23: foot mesenchyme Strong Regionally restricted euxassay_008884_09
TS23: midbrain mantle layer Strong Regionally restricted euxassay_008884_09
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_008884_09
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_008884_09
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_008884_09
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_008884_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008884_09
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_008884_09
TS23: pons mantle layer Moderate Regionally restricted euxassay_008884_09
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_008884_09
Specimen euxassay_008884_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_008884_10
TS23: trigeminal nerve Moderate Regionally restricted euxassay_008884_10
TS23: tongue Moderate Regionally restricted euxassay_008884_10
TS23: palatal shelf Strong Regionally restricted euxassay_008884_10
TS23: upper lip Moderate Regionally restricted euxassay_008884_10
TS23: lower lip Moderate Regionally restricted euxassay_008884_10
TS23: foot mesenchyme Moderate Regionally restricted euxassay_008884_10
TS23: hindlimb digit 5 metatarsal Moderate Regionally restricted euxassay_008884_10
TS23: hindlimb digit 4 metatarsal Moderate Regionally restricted euxassay_008884_10
TS23: hindlimb digit 3 metatarsal Moderate Regionally restricted euxassay_008884_10
TS23: hindlimb digit 2 metatarsal Moderate Regionally restricted euxassay_008884_10
TS23: hindlimb digit 1 metatarsal Moderate Regionally restricted euxassay_008884_10
TS23: midbrain mantle layer Strong Regionally restricted euxassay_008884_10
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_008884_10
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_008884_10
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_008884_10
TS23: pons mantle layer Moderate Regionally restricted euxassay_008884_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008884_10
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_008884_10
Specimen euxassay_008884_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_008884_11
TS23: tongue Moderate Regionally restricted euxassay_008884_11
TS23: palatal shelf Strong Regionally restricted euxassay_008884_11
TS23: upper lip Moderate Regionally restricted euxassay_008884_11
TS23: lower lip Moderate Regionally restricted euxassay_008884_11
TS23: midbrain mantle layer Strong Regionally restricted euxassay_008884_11
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_008884_11
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_008884_11
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_008884_11
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008884_11
TS23: pons mantle layer Moderate Regionally restricted euxassay_008884_11
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_008884_11
Specimen euxassay_008884_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_008884_12
TS23: tongue Moderate Regionally restricted euxassay_008884_12
TS23: glans of male genital tubercle Moderate Regionally restricted euxassay_008884_12
TS23: palatal shelf Strong Regionally restricted euxassay_008884_12
TS23: upper jaw incisor Moderate Regionally restricted euxassay_008884_12
TS23: lower jaw incisor Moderate Regionally restricted euxassay_008884_12
TS23: lower lip Moderate Regionally restricted euxassay_008884_12
TS23: upper lip Moderate Regionally restricted euxassay_008884_12
TS23: urethra Moderate Regionally restricted euxassay_008884_12 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: midbrain mantle layer Strong Regionally restricted euxassay_008884_12
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_008884_12
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_008884_12
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_008884_12
TS23: pons mantle layer Moderate Regionally restricted euxassay_008884_12
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008884_12
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_008884_12
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_008884_12
TS23: heart valve Moderate Regionally restricted euxassay_008884_12
TS23: tail mesenchyme Weak Regionally restricted euxassay_008884_12
Specimen euxassay_008884_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_008884_13
TS23: tongue Moderate Regionally restricted euxassay_008884_13
TS23: palatal shelf Strong Regionally restricted euxassay_008884_13
TS23: upper lip Moderate Regionally restricted euxassay_008884_13
TS23: lower lip Moderate Regionally restricted euxassay_008884_13
TS23: urethra Moderate Regionally restricted euxassay_008884_13 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: midbrain mantle layer Strong Regionally restricted euxassay_008884_13
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_008884_13
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_008884_13
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008884_13
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_008884_13
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_008884_13
TS23: pons mantle layer Moderate Regionally restricted euxassay_008884_13
TS23: heart valve Moderate Regionally restricted euxassay_008884_13
TS23: tail mesenchyme Weak Regionally restricted euxassay_008884_13
Specimen euxassay_008884_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_008884_14
TS23: metanephros Weak Regionally restricted euxassay_008884_14
TS23: tongue Moderate Regionally restricted euxassay_008884_14
TS23: glans of male genital tubercle Moderate Regionally restricted euxassay_008884_14
TS23: palatal shelf Strong Regionally restricted euxassay_008884_14
TS23: upper lip Moderate Regionally restricted euxassay_008884_14
TS23: lower lip Moderate Regionally restricted euxassay_008884_14
TS23: urethra Moderate Regionally restricted euxassay_008884_14 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: midbrain mantle layer Strong Regionally restricted euxassay_008884_14
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_008884_14
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_008884_14
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_008884_14
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_008884_14
TS23: pons mantle layer Moderate Regionally restricted euxassay_008884_14
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008884_14
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_008884_14
TS23: tail mesenchyme Weak Regionally restricted euxassay_008884_14
Specimen euxassay_008884_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_008884_15
TS23: metanephros Moderate Regionally restricted euxassay_008884_15
TS23: tongue Moderate Regionally restricted euxassay_008884_15
TS23: glans of male genital tubercle Moderate Regionally restricted euxassay_008884_15
TS23: palatal shelf Strong Regionally restricted euxassay_008884_15
TS23: lower jaw incisor Moderate Regionally restricted euxassay_008884_15
TS23: upper jaw incisor Moderate Regionally restricted euxassay_008884_15
TS23: upper lip Moderate Regionally restricted euxassay_008884_15
TS23: lower lip Moderate Regionally restricted euxassay_008884_15
TS23: saccule Strong Regionally restricted euxassay_008884_15
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_008884_15
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_008884_15
TS23: midbrain mantle layer Strong Regionally restricted euxassay_008884_15
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_008884_15
TS23: pons mantle layer Moderate Regionally restricted euxassay_008884_15
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_008884_15
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_008884_15
TS23: tail mesenchyme Weak Regionally restricted euxassay_008884_15
Specimen euxassay_008884_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_008884_16
TS23: metanephros Strong Regionally restricted euxassay_008884_16
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_008884_16
TS23: trigeminal nerve Moderate Regionally restricted euxassay_008884_16
TS23: tongue Moderate Regionally restricted euxassay_008884_16
TS23: glans of male genital tubercle Strong Regionally restricted euxassay_008884_16
TS23: upper jaw incisor Moderate Regionally restricted euxassay_008884_16
TS23: upper lip Moderate Regionally restricted euxassay_008884_16
TS23: lower lip Moderate Regionally restricted euxassay_008884_16
TS23: saccule Strong Regionally restricted euxassay_008884_16
TS23: midbrain mantle layer Strong Regionally restricted euxassay_008884_16
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_008884_16
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_008884_16
TS23: pons mantle layer Moderate Regionally restricted euxassay_008884_16
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_008884_16
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_008884_16
TS23: tail mesenchyme Moderate Regionally restricted euxassay_008884_16
Specimen euxassay_008884_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_008884_17
TS23: metanephros Strong Regionally restricted euxassay_008884_17
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_008884_17
TS23: lower lip Moderate Regionally restricted euxassay_008884_17
TS23: upper lip Moderate Regionally restricted euxassay_008884_17
TS23: upper jaw molar Moderate Regionally restricted euxassay_008884_17
TS23: lower jaw molar Moderate Regionally restricted euxassay_008884_17
TS23: midbrain mantle layer Strong Regionally restricted euxassay_008884_17
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_008884_17
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_008884_17
TS23: pons mantle layer Moderate Regionally restricted euxassay_008884_17
Specimen euxassay_008884_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_008884_18
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_008884_18
TS23: lower jaw molar Moderate Regionally restricted euxassay_008884_18
TS23: upper jaw molar Moderate Regionally restricted euxassay_008884_18
TS23: upper lip Moderate Regionally restricted euxassay_008884_18
TS23: lower lip Moderate Regionally restricted euxassay_008884_18
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_008884_18
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_008884_18
Specimen euxassay_008884_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Moderate Regionally restricted euxassay_008884_19
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_008884_19
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_008884_19
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_008884_19
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory