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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4824128
Gene symbol: Cx3cl1
Gene name: C-X3-C motif chemokine ligand 1
Probe: MGC clone 5859
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_003381_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Moderate Regionally restricted euxassay_003381_01
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_003381_01
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_003381_01
Specimen euxassay_003381_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Moderate Regionally restricted euxassay_003381_02
TS23: epidermis Moderate Regionally restricted euxassay_003381_02
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_003381_02
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_003381_02
Specimen euxassay_003381_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Weak Regionally restricted euxassay_003381_03
TS23: epidermis Weak Regionally restricted euxassay_003381_03
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_003381_03
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_003381_03
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_003381_03
Specimen euxassay_003381_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Weak Regionally restricted euxassay_003381_04
TS23: vibrissa Weak Regionally restricted euxassay_003381_04
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_003381_04
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_003381_04
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_003381_04
Specimen euxassay_003381_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Moderate Regionally restricted euxassay_003381_05
TS23: epidermis Moderate Regionally restricted euxassay_003381_05
TS23: testis Weak Regionally restricted euxassay_003381_05
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_003381_05
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_003381_05
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_003381_05
Specimen euxassay_003381_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Weak Regionally restricted euxassay_003381_06
TS23: testis Weak Regionally restricted euxassay_003381_06
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_003381_06
Specimen euxassay_003381_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Weak Regionally restricted euxassay_003381_07
TS23: olfactory epithelium Weak Regionally restricted euxassay_003381_07
TS23: testis Weak Regionally restricted euxassay_003381_07
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_003381_07
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_003381_07
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_003381_07
Specimen euxassay_003381_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Weak Regionally restricted euxassay_003381_08
TS23: olfactory epithelium Weak Regionally restricted euxassay_003381_08
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_003381_08
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_003381_08
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_003381_08
Specimen euxassay_003381_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Weak Regionally restricted euxassay_003381_09
TS23: olfactory epithelium Weak Regionally restricted euxassay_003381_09
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_003381_09
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_003381_09
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_003381_09
Specimen euxassay_003381_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Weak Regionally restricted euxassay_003381_10
TS23: olfactory epithelium Weak Regionally restricted euxassay_003381_10
TS23: nasal cavity respiratory epithelium Weak Regionally restricted euxassay_003381_10
TS23: naris Weak Regionally restricted euxassay_003381_10
Specimen euxassay_003381_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Weak Regionally restricted euxassay_003381_11
TS23: olfactory epithelium Weak Regionally restricted euxassay_003381_11
TS23: nasal cavity respiratory epithelium Weak Regionally restricted euxassay_003381_11
TS23: ventral grey horn Moderate Regionally restricted euxassay_003381_11
Specimen euxassay_003381_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Weak Regionally restricted euxassay_003381_12
TS23: rectum Moderate Regionally restricted euxassay_003381_12
TS23: ventral grey horn Moderate Regionally restricted euxassay_003381_12
TS23: thymus primordium Weak Uniform euxassay_003381_12
TS23: pons ventricular layer Weak Regionally restricted euxassay_003381_12
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_003381_12
Specimen euxassay_003381_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Moderate Regionally restricted euxassay_003381_13
TS23: naris Weak Regionally restricted euxassay_003381_13
TS23: ventral grey horn Moderate Regionally restricted euxassay_003381_13
TS23: thyroid cartilage Weak Regionally restricted euxassay_003381_13
TS23: thymus primordium Weak Uniform euxassay_003381_13
Specimen euxassay_003381_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Weak Regionally restricted euxassay_003381_14
TS23: nasal cavity respiratory epithelium Weak Regionally restricted euxassay_003381_14
TS23: ventral grey horn Weak Regionally restricted euxassay_003381_14
TS23: esophagus Weak Regionally restricted euxassay_003381_14
TS23: thyroid cartilage Weak Regionally restricted euxassay_003381_14
TS23: thymus primordium Weak Uniform euxassay_003381_14
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_003381_14
Specimen euxassay_003381_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Weak Regionally restricted euxassay_003381_15
TS23: olfactory epithelium Weak Regionally restricted euxassay_003381_15
TS23: ventral grey horn Weak Regionally restricted euxassay_003381_15
TS23: trachea Weak Regionally restricted euxassay_003381_15
TS23: esophagus Weak Regionally restricted euxassay_003381_15
TS23: thyroid cartilage Weak Regionally restricted euxassay_003381_15
TS23: thymus primordium Weak Uniform euxassay_003381_15
Specimen euxassay_003381_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Weak Regionally restricted euxassay_003381_16
TS23: nasal cavity respiratory epithelium Weak Regionally restricted euxassay_003381_16
TS23: ventral grey horn Moderate Regionally restricted euxassay_003381_16
TS23: trachea Weak Regionally restricted euxassay_003381_16
TS23: thymus primordium Weak Uniform euxassay_003381_16
Specimen euxassay_003381_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Weak Regionally restricted euxassay_003381_17
TS23: olfactory epithelium Weak Regionally restricted euxassay_003381_17
TS23: ventral grey horn Weak Regionally restricted euxassay_003381_17
TS23: thymus primordium Weak Uniform euxassay_003381_17
Specimen euxassay_003381_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Weak Regionally restricted euxassay_003381_18
TS23: ventral grey horn Moderate Regionally restricted euxassay_003381_18
Specimen euxassay_003381_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Weak Regionally restricted euxassay_003381_19
Specimen euxassay_003381_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Moderate Regionally restricted euxassay_003381_20
TS23: vibrissa Moderate Regionally restricted euxassay_003381_20
TS23: testis Moderate Regionally restricted euxassay_003381_20
TS23: telencephalon marginal layer Weak Regionally restricted euxassay_003381_20
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_003381_20
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_003381_20
Specimen euxassay_003381_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Moderate Regionally restricted euxassay_003381_21
TS23: epidermis Moderate Regionally restricted euxassay_003381_21
TS23: testis Weak Regionally restricted euxassay_003381_21
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_003381_21
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_003381_21
Specimen euxassay_003381_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Moderate Regionally restricted euxassay_003381_22
TS23: vibrissa Moderate Regionally restricted euxassay_003381_22
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_003381_22
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_003381_22
Specimen euxassay_003381_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Weak Regionally restricted euxassay_003381_23
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_003381_23
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_003381_23
Specimen euxassay_003381_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Weak Regionally restricted euxassay_003381_24
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003381_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory