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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823997
Gene symbol: Col9a3
Gene name: collagen, type IX, alpha 3
Probe: MGC clone 32160
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_002050_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pectoral girdle and thoracic body wall musculature Strong Regionally restricted euxassay_002050_01
TS23: axial skeleton Strong Regionally restricted euxassay_002050_01
TS23: hand mesenchyme Strong Regionally restricted euxassay_002050_01
TS23: leg Strong Regionally restricted euxassay_002050_01
TS23: trachea Strong Regionally restricted euxassay_002050_01
TS23: exoccipital bone Strong Regionally restricted euxassay_002050_01
TS23: orbito-sphenoid Strong Regionally restricted euxassay_002050_01

Specimen euxassay_002050_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pectoral girdle and thoracic body wall musculature Strong Regionally restricted euxassay_002050_02
TS23: submandibular gland primordium Strong Regionally restricted euxassay_002050_02
TS23: axial skeleton Strong Regionally restricted euxassay_002050_02
TS23: hand mesenchyme Strong Regionally restricted euxassay_002050_02
TS23: leg Strong Regionally restricted euxassay_002050_02
TS23: exoccipital bone Strong Regionally restricted euxassay_002050_02
TS23: orbito-sphenoid Strong Regionally restricted euxassay_002050_02
TS23: 4th ventricle lateral recess Strong Regionally restricted euxassay_002050_02
TS23: testis Strong Regionally restricted euxassay_002050_02

Specimen euxassay_002050_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pectoral girdle and thoracic body wall musculature Strong Regionally restricted euxassay_002050_03
TS23: submandibular gland primordium Strong Regionally restricted euxassay_002050_03
TS23: axial skeleton Strong Regionally restricted euxassay_002050_03
TS23: leg Strong Regionally restricted euxassay_002050_03
TS23: hand mesenchyme Strong Regionally restricted euxassay_002050_03
TS23: orbito-sphenoid Strong Regionally restricted euxassay_002050_03
TS23: exoccipital bone Strong Regionally restricted euxassay_002050_03
TS23: 4th ventricle lateral recess Strong Regionally restricted euxassay_002050_03
TS23: testis Strong Regionally restricted euxassay_002050_03

Specimen euxassay_002050_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pectoral girdle and thoracic body wall musculature Strong Regionally restricted euxassay_002050_04
TS23: submandibular gland primordium Strong Regionally restricted euxassay_002050_04
TS23: axial skeleton Strong Regionally restricted euxassay_002050_04
TS23: hand mesenchyme Strong Regionally restricted euxassay_002050_04
TS23: leg Strong Regionally restricted euxassay_002050_04
TS23: orbito-sphenoid Strong Regionally restricted euxassay_002050_04
TS23: exoccipital bone Strong Regionally restricted euxassay_002050_04
TS23: 4th ventricle lateral recess Strong Regionally restricted euxassay_002050_04
TS23: testis Strong Regionally restricted euxassay_002050_04

Specimen euxassay_002050_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pectoral girdle and thoracic body wall musculature Strong Regionally restricted euxassay_002050_05
TS23: submandibular gland primordium Strong Regionally restricted euxassay_002050_05
TS23: axial skeleton Strong Regionally restricted euxassay_002050_05
TS23: hindlimb digit 1 mesenchyme Strong Regionally restricted euxassay_002050_05
TS23: hindlimb digit 2 mesenchyme Strong Regionally restricted euxassay_002050_05
TS23: hindlimb digit 3 mesenchyme Strong Regionally restricted euxassay_002050_05
TS23: hindlimb digit 4 mesenchyme Strong Regionally restricted euxassay_002050_05
TS23: orbito-sphenoid Strong Regionally restricted euxassay_002050_05
TS23: exoccipital bone Strong Regionally restricted euxassay_002050_05
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_002050_05
TS23: 4th ventricle lateral recess Strong Regionally restricted euxassay_002050_05
TS23: testis Strong Regionally restricted euxassay_002050_05

Specimen euxassay_002050_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pectoral girdle and thoracic body wall musculature Strong Regionally restricted euxassay_002050_06
TS23: axial skeleton Strong Regionally restricted euxassay_002050_06
TS23: hindlimb digit 4 mesenchyme Strong Regionally restricted euxassay_002050_06
TS23: hindlimb digit 3 mesenchyme Strong Regionally restricted euxassay_002050_06
TS23: hindlimb digit 5 mesenchyme Strong Regionally restricted euxassay_002050_06
TS23: hindlimb digit 2 mesenchyme Strong Regionally restricted euxassay_002050_06
TS23: hindlimb digit 1 mesenchyme Strong Regionally restricted euxassay_002050_06
TS23: trachea Strong Regionally restricted euxassay_002050_06
TS23: orbito-sphenoid Strong Regionally restricted euxassay_002050_06
TS23: exoccipital bone Strong Regionally restricted euxassay_002050_06
TS23: 4th ventricle lateral recess Strong Regionally restricted euxassay_002050_06
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_002050_06

Specimen euxassay_002050_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pectoral girdle and thoracic body wall musculature Strong Regionally restricted euxassay_002050_07
TS23: axial skeleton Strong Regionally restricted euxassay_002050_07
TS23: hindlimb digit 1 mesenchyme Strong Regionally restricted euxassay_002050_07
TS23: hindlimb digit 2 mesenchyme Strong Regionally restricted euxassay_002050_07
TS23: hindlimb digit 3 mesenchyme Strong Regionally restricted euxassay_002050_07
TS23: hindlimb digit 4 mesenchyme Strong Regionally restricted euxassay_002050_07
TS23: hindlimb digit 5 mesenchyme Strong Regionally restricted euxassay_002050_07
TS23: orbito-sphenoid Strong Regionally restricted euxassay_002050_07
TS23: exoccipital bone Strong Regionally restricted euxassay_002050_07
TS23: turbinate bone primordium Strong Regionally restricted euxassay_002050_07
TS23: 4th ventricle lateral recess Strong Regionally restricted euxassay_002050_07
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_002050_07

Specimen euxassay_002050_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pectoral girdle and thoracic body wall musculature Strong Regionally restricted euxassay_002050_08
TS23: axial skeleton Strong Regionally restricted euxassay_002050_08
TS23: hindlimb digit 1 mesenchyme Strong Regionally restricted euxassay_002050_08
TS23: hindlimb digit 5 mesenchyme Strong Regionally restricted euxassay_002050_08
TS23: turbinate bone primordium Strong Regionally restricted euxassay_002050_08
TS23: exoccipital bone Strong Regionally restricted euxassay_002050_08
TS23: basisphenoid bone Strong Regionally restricted euxassay_002050_08
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_002050_08
TS23: 4th ventricle lateral recess Strong Regionally restricted euxassay_002050_08

Specimen euxassay_002050_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pectoral girdle and thoracic body wall musculature Strong Regionally restricted euxassay_002050_09
TS23: axial skeleton Strong Regionally restricted euxassay_002050_09
TS23: hindlimb digit 5 mesenchyme Strong Regionally restricted euxassay_002050_09
TS23: turbinate bone primordium Strong Regionally restricted euxassay_002050_09
TS23: basisphenoid bone Strong Regionally restricted euxassay_002050_09
TS23: exoccipital bone Strong Regionally restricted euxassay_002050_09
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_002050_09

Specimen euxassay_002050_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pectoral girdle and thoracic body wall musculature Strong Regionally restricted euxassay_002050_10
TS23: axial skeleton Strong Regionally restricted euxassay_002050_10
TS23: exoccipital bone Strong Regionally restricted euxassay_002050_10
TS23: basisphenoid bone Strong Regionally restricted euxassay_002050_10
TS23: turbinate bone primordium Strong Regionally restricted euxassay_002050_10
TS23: orbito-sphenoid Strong Regionally restricted euxassay_002050_10
TS23: 4th ventricle lateral recess Strong Regionally restricted euxassay_002050_10
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_002050_10

Specimen euxassay_002050_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pectoral girdle and thoracic body wall musculature Strong Regionally restricted euxassay_002050_11
TS23: submandibular gland primordium Strong Regionally restricted euxassay_002050_11
TS23: axial skeleton Strong Regionally restricted euxassay_002050_11
TS23: basioccipital bone Strong Regionally restricted euxassay_002050_11
TS23: basisphenoid bone Strong Regionally restricted euxassay_002050_11
TS23: exoccipital bone Strong Regionally restricted euxassay_002050_11
TS23: orbito-sphenoid Strong Regionally restricted euxassay_002050_11
TS23: turbinate bone primordium Strong Regionally restricted euxassay_002050_11
TS23: 4th ventricle lateral recess Strong Regionally restricted euxassay_002050_11

Specimen euxassay_002050_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pectoral girdle and thoracic body wall musculature Strong Regionally restricted euxassay_002050_12
TS23: submandibular gland primordium Strong Regionally restricted euxassay_002050_12
TS23: axial skeleton Strong Regionally restricted euxassay_002050_12
TS23: exoccipital bone Strong Regionally restricted euxassay_002050_12
TS23: temporal bone Strong Regionally restricted euxassay_002050_12
TS23: orbito-sphenoid Strong Regionally restricted euxassay_002050_12
TS23: turbinate bone primordium Strong Regionally restricted euxassay_002050_12
TS23: 4th ventricle lateral recess Strong Regionally restricted euxassay_002050_12
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_002050_12

Specimen euxassay_002050_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pectoral girdle and thoracic body wall musculature Strong Regionally restricted euxassay_002050_13
TS23: submandibular gland primordium Strong Regionally restricted euxassay_002050_13
TS23: axial skeleton Strong Regionally restricted euxassay_002050_13
TS23: exoccipital bone Strong Regionally restricted euxassay_002050_13
TS23: temporal bone Strong Regionally restricted euxassay_002050_13
TS23: orbito-sphenoid Strong Regionally restricted euxassay_002050_13
TS23: turbinate bone primordium Strong Regionally restricted euxassay_002050_13
TS23: 4th ventricle lateral recess Strong Regionally restricted euxassay_002050_13
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_002050_13

Specimen euxassay_002050_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pectoral girdle and thoracic body wall musculature Strong Regionally restricted euxassay_002050_14
TS23: submandibular gland primordium Strong Regionally restricted euxassay_002050_14
TS23: axial skeleton Strong Regionally restricted euxassay_002050_14
TS23: exoccipital bone Strong Regionally restricted euxassay_002050_14
TS23: temporal bone Strong Regionally restricted euxassay_002050_14
TS23: 4th ventricle lateral recess Strong Regionally restricted euxassay_002050_14

Specimen euxassay_002050_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pectoral girdle and thoracic body wall musculature Strong Regionally restricted euxassay_002050_15
TS23: axial skeleton Strong Regionally restricted euxassay_002050_15
TS23: hindlimb digit 1 mesenchyme Strong Regionally restricted euxassay_002050_15
TS23: hindlimb digit 2 mesenchyme Strong Regionally restricted euxassay_002050_15
TS23: hindlimb digit 3 mesenchyme Strong Regionally restricted euxassay_002050_15
TS23: temporal bone Strong Regionally restricted euxassay_002050_15
TS23: exoccipital bone Strong Regionally restricted euxassay_002050_15
TS23: basioccipital bone Strong Regionally restricted euxassay_002050_15
TS23: basisphenoid bone Strong Regionally restricted euxassay_002050_15
TS23: orbito-sphenoid Strong Regionally restricted euxassay_002050_15
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_002050_15
TS23: testis Strong Regionally restricted euxassay_002050_15

Specimen euxassay_002050_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pectoral girdle and thoracic body wall musculature Strong Regionally restricted euxassay_002050_16
TS23: hindlimb digit 1 mesenchyme Strong Regionally restricted euxassay_002050_16
TS23: hindlimb digit 2 mesenchyme Strong Regionally restricted euxassay_002050_16
TS23: hindlimb digit 3 mesenchyme Strong Regionally restricted euxassay_002050_16
TS23: temporal bone Strong Regionally restricted euxassay_002050_16
TS23: basisphenoid bone Strong Regionally restricted euxassay_002050_16
TS23: basioccipital bone Strong Regionally restricted euxassay_002050_16
TS23: exoccipital bone Strong Regionally restricted euxassay_002050_16
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_002050_16
TS23: testis Strong Regionally restricted euxassay_002050_16

Specimen euxassay_002050_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pectoral girdle and thoracic body wall musculature Strong Regionally restricted euxassay_002050_17
TS23: hindlimb digit 1 mesenchyme Strong Regionally restricted euxassay_002050_17
TS23: hindlimb digit 2 mesenchyme Strong Regionally restricted euxassay_002050_17
TS23: hindlimb digit 3 mesenchyme Strong Regionally restricted euxassay_002050_17
TS23: hindlimb digit 4 mesenchyme Strong Regionally restricted euxassay_002050_17
TS23: turbinate bone primordium Strong Regionally restricted euxassay_002050_17
TS23: orbito-sphenoid Strong Regionally restricted euxassay_002050_17
TS23: temporal bone Strong Regionally restricted euxassay_002050_17
TS23: basioccipital bone Strong Regionally restricted euxassay_002050_17
TS23: basisphenoid bone Strong Regionally restricted euxassay_002050_17
TS23: exoccipital bone Strong Regionally restricted euxassay_002050_17
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_002050_17
TS23: testis Strong Regionally restricted euxassay_002050_17

Specimen euxassay_002050_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pectoral girdle and thoracic body wall musculature Strong Regionally restricted euxassay_002050_18
TS23: rib Strong Regionally restricted euxassay_002050_18
TS23: hindlimb digit 1 mesenchyme Strong Regionally restricted euxassay_002050_18
TS23: hindlimb digit 2 mesenchyme Strong Regionally restricted euxassay_002050_18
TS23: hindlimb digit 3 mesenchyme Strong Regionally restricted euxassay_002050_18
TS23: hindlimb digit 4 mesenchyme Strong Regionally restricted euxassay_002050_18
TS23: temporal bone Strong Regionally restricted euxassay_002050_18
TS23: basisphenoid bone Strong Regionally restricted euxassay_002050_18
TS23: exoccipital bone Strong Regionally restricted euxassay_002050_18
TS23: orbito-sphenoid Strong Regionally restricted euxassay_002050_18
TS23: turbinate bone primordium Strong Regionally restricted euxassay_002050_18
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_002050_18
TS23: testis Strong Regionally restricted euxassay_002050_18

Specimen euxassay_002050_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pectoral girdle and thoracic body wall musculature Strong Regionally restricted euxassay_002050_19
TS23: rib Strong Regionally restricted euxassay_002050_19
TS23: hindlimb digit 1 mesenchyme Strong Regionally restricted euxassay_002050_19
TS23: hindlimb digit 2 mesenchyme Strong Regionally restricted euxassay_002050_19
TS23: hindlimb digit 3 mesenchyme Strong Regionally restricted euxassay_002050_19
TS23: hindlimb digit 4 mesenchyme Strong Regionally restricted euxassay_002050_19
TS23: hindlimb digit 5 mesenchyme Strong Regionally restricted euxassay_002050_19
TS23: orbito-sphenoid Strong Regionally restricted euxassay_002050_19
TS23: turbinate bone primordium Strong Regionally restricted euxassay_002050_19
TS23: temporal bone Strong Regionally restricted euxassay_002050_19
TS23: basisphenoid bone Strong Regionally restricted euxassay_002050_19
TS23: exoccipital bone Strong Regionally restricted euxassay_002050_19
TS23: basioccipital bone Strong Regionally restricted euxassay_002050_19

Specimen euxassay_002050_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_002050_20
TS23: hindlimb digit 2 mesenchyme Strong Regionally restricted euxassay_002050_20
TS23: hindlimb digit 3 mesenchyme Strong Regionally restricted euxassay_002050_20
TS23: hindlimb digit 4 mesenchyme Strong Regionally restricted euxassay_002050_20
TS23: hindlimb digit 5 mesenchyme Strong Regionally restricted euxassay_002050_20
TS23: hand mesenchyme Strong Regionally restricted euxassay_002050_20
TS23: basioccipital bone Strong Regionally restricted euxassay_002050_20
TS23: basisphenoid bone Strong Regionally restricted euxassay_002050_20
TS23: exoccipital bone Strong Regionally restricted euxassay_002050_20
TS23: temporal bone Strong Regionally restricted euxassay_002050_20
TS23: orbito-sphenoid Strong Regionally restricted euxassay_002050_20

Specimen euxassay_002050_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_002050_21
TS23: hand mesenchyme Strong Regionally restricted euxassay_002050_21
TS23: hindlimb digit 1 mesenchyme Strong Regionally restricted euxassay_002050_21
TS23: hindlimb digit 2 mesenchyme Strong Regionally restricted euxassay_002050_21
TS23: orbito-sphenoid Strong Regionally restricted euxassay_002050_21
TS23: temporal bone Strong Regionally restricted euxassay_002050_21
TS23: exoccipital bone Strong Regionally restricted euxassay_002050_21

Specimen euxassay_002050_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_002050_22
TS23: leg Strong Regionally restricted euxassay_002050_22
TS23: hand mesenchyme Strong Regionally restricted euxassay_002050_22

Specimen euxassay_002050_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hand mesenchyme Strong Regionally restricted euxassay_002050_23
TS23: leg Strong Regionally restricted euxassay_002050_23


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last database update
04/09/2024
MGI 6.23
The Jackson Laboratory