About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823996
Gene symbol: Col9a2
Gene name: collagen, type IX, alpha 2
Probe: IMAGE clone 480602
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_000512_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_000512_01
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_01
TS23: otic capsule Moderate Regionally restricted euxassay_000512_01
TS23: cranium Strong Regionally restricted euxassay_000512_01
TS23: hand mesenchyme Moderate Regionally restricted euxassay_000512_01
TS23: hip mesenchyme Moderate Regionally restricted euxassay_000512_01
Specimen euxassay_000512_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_000512_02
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_02
TS23: otic capsule Moderate Regionally restricted euxassay_000512_02
TS23: cranium Strong Regionally restricted euxassay_000512_02
TS23: hip mesenchyme Moderate Regionally restricted euxassay_000512_02
TS23: hand mesenchyme Moderate Regionally restricted euxassay_000512_02
Specimen euxassay_000512_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_000512_03
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_03
TS23: otic capsule Moderate Regionally restricted euxassay_000512_03
TS23: cranium Strong Regionally restricted euxassay_000512_03
TS23: hand mesenchyme Moderate Regionally restricted euxassay_000512_03
TS23: hip mesenchyme Moderate Regionally restricted euxassay_000512_03
Specimen euxassay_000512_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_000512_04
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_04
TS23: otic capsule Moderate Regionally restricted euxassay_000512_04
TS23: cranium Strong Regionally restricted euxassay_000512_04
TS23: hip mesenchyme Moderate Regionally restricted euxassay_000512_04
TS23: hand mesenchyme Moderate Regionally restricted euxassay_000512_04
Specimen euxassay_000512_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: otic capsule Moderate Regionally restricted euxassay_000512_05
TS23: cranium Strong Regionally restricted euxassay_000512_05
Specimen euxassay_000512_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_06
TS23: otic capsule Moderate Regionally restricted euxassay_000512_06
TS23: cranium Strong Regionally restricted euxassay_000512_06
TS23: hindlimb digit 1 mesenchyme Moderate Regionally restricted euxassay_000512_06
TS23: hindlimb digit 2 mesenchyme Moderate Regionally restricted euxassay_000512_06
TS23: hindlimb digit 3 mesenchyme Moderate Regionally restricted euxassay_000512_06
Specimen euxassay_000512_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_07
TS23: otic capsule Moderate Regionally restricted euxassay_000512_07
TS23: cranium Strong Regionally restricted euxassay_000512_07
TS23: hindlimb digit 3 mesenchyme Moderate Regionally restricted euxassay_000512_07
TS23: hindlimb digit 4 mesenchyme Moderate Regionally restricted euxassay_000512_07
TS23: hindlimb digit 5 mesenchyme Moderate Regionally restricted euxassay_000512_07
Specimen euxassay_000512_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_08
TS23: axial skeleton cervical region Strong Regionally restricted euxassay_000512_08
TS23: rib Strong Regionally restricted euxassay_000512_08
TS23: otic capsule Moderate Regionally restricted euxassay_000512_08
TS23: turbinate bone primordium Strong Regionally restricted euxassay_000512_08
TS23: cranium Strong Regionally restricted euxassay_000512_08
Specimen euxassay_000512_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: otic capsule Moderate Regionally restricted euxassay_000512_09
TS23: turbinate bone primordium Weak Regionally restricted euxassay_000512_09
Specimen euxassay_000512_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_10
TS23: axial skeleton thoracic region Moderate Regionally restricted euxassay_000512_10
TS23: axial skeleton cervical region Moderate Regionally restricted euxassay_000512_10
TS23: turbinate bone primordium Weak Regionally restricted euxassay_000512_10
Specimen euxassay_000512_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_11
TS23: axial skeleton thoracic region Moderate Regionally restricted euxassay_000512_11
TS23: axial skeleton cervical region Moderate Regionally restricted euxassay_000512_11
TS23: turbinate bone primordium Strong Regionally restricted euxassay_000512_11
Specimen euxassay_000512_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_12
TS23: axial skeleton thoracic region Strong Regionally restricted euxassay_000512_12
TS23: axial skeleton lumbar region Moderate Regionally restricted euxassay_000512_12
TS23: axial skeleton cervical region Moderate Regionally restricted euxassay_000512_12
TS23: turbinate bone primordium Strong Regionally restricted euxassay_000512_12
Specimen euxassay_000512_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton thoracic region Weak Regionally restricted euxassay_000512_13
TS23: axial skeleton lumbar region Strong Regionally restricted euxassay_000512_13
TS23: axial skeleton sacral region Strong Regionally restricted euxassay_000512_13
TS23: axial skeleton cervical region Weak Regionally restricted euxassay_000512_13
Specimen euxassay_000512_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Moderate Regionally restricted euxassay_000512_14
TS23: axial skeleton thoracic region Moderate Regionally restricted euxassay_000512_14
TS23: axial skeleton sacral region Moderate Regionally restricted euxassay_000512_14
TS23: axial skeleton lumbar region Moderate Regionally restricted euxassay_000512_14
TS23: turbinate bone primordium Strong Regionally restricted euxassay_000512_14
Specimen euxassay_000512_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_15
TS23: axial skeleton cervical region Strong Regionally restricted euxassay_000512_15
TS23: axial skeleton lumbar region Strong Regionally restricted euxassay_000512_15
TS23: axial skeleton sacral region Strong Regionally restricted euxassay_000512_15
TS23: axial skeleton thoracic region Strong Regionally restricted euxassay_000512_15
TS23: axial skeleton tail region Strong Regionally restricted euxassay_000512_15
TS23: otic capsule Moderate Regionally restricted euxassay_000512_15
TS23: turbinate bone primordium Strong Regionally restricted euxassay_000512_15
Specimen euxassay_000512_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_16
TS23: axial skeleton thoracic region Strong Regionally restricted euxassay_000512_16
TS23: axial skeleton lumbar region Strong Regionally restricted euxassay_000512_16
TS23: axial skeleton sacral region Strong Regionally restricted euxassay_000512_16
TS23: axial skeleton cervical region Strong Regionally restricted euxassay_000512_16
TS23: axial skeleton tail region Strong Regionally restricted euxassay_000512_16
TS23: otic capsule Moderate Regionally restricted euxassay_000512_16
TS23: turbinate bone primordium Strong Regionally restricted euxassay_000512_16
Specimen euxassay_000512_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: otic capsule Moderate Regionally restricted euxassay_000512_17
TS23: turbinate bone primordium Weak Regionally restricted euxassay_000512_17
Specimen euxassay_000512_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Moderate Regionally restricted euxassay_000512_18
TS23: otic capsule Moderate Regionally restricted euxassay_000512_18
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_000512_18
Specimen euxassay_000512_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_19
TS23: otic capsule Moderate Regionally restricted euxassay_000512_19
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_000512_19
TS23: cranium Strong Regionally restricted euxassay_000512_19
Specimen euxassay_000512_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_20
TS23: otic capsule Moderate Regionally restricted euxassay_000512_20
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_000512_20
TS23: cranium Strong Regionally restricted euxassay_000512_20
Specimen euxassay_000512_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_21
TS23: otic capsule Moderate Regionally restricted euxassay_000512_21
TS23: cranium Strong Regionally restricted euxassay_000512_21
Specimen euxassay_000512_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_22
TS23: otic capsule Moderate Regionally restricted euxassay_000512_22
TS23: cranium Strong Regionally restricted euxassay_000512_22
Specimen euxassay_000512_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_23
TS23: otic capsule Moderate Regionally restricted euxassay_000512_23
TS23: cranium Strong Regionally restricted euxassay_000512_23
TS23: hindlimb digit 4 mesenchyme Moderate Regionally restricted euxassay_000512_23
Specimen euxassay_000512_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_000512_24
TS23: thoracic segment skeleton Strong Regionally restricted euxassay_000512_24
TS23: otic capsule Moderate Regionally restricted euxassay_000512_24
TS23: cranium Strong Regionally restricted euxassay_000512_24
TS23: hindlimb digit 5 mesenchyme Moderate Regionally restricted euxassay_000512_24
TS23: hindlimb digit 4 mesenchyme Moderate Regionally restricted euxassay_000512_24
TS23: hindlimb digit 3 mesenchyme Moderate Regionally restricted euxassay_000512_24
TS23: hindlimb digit 2 mesenchyme Moderate Regionally restricted euxassay_000512_24
TS23: hand mesenchyme Moderate Regionally restricted euxassay_000512_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory