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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823995
Gene symbol: Col9a1
Gene name: collagen, type IX, alpha 1
Probe: T30372
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_011520_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_011520_01
TS23: vault of skull Strong Regionally restricted euxassay_011520_01
TS23: orbito-sphenoid Strong Regionally restricted euxassay_011520_01
TS23: temporal bone Strong Regionally restricted euxassay_011520_01
TS23: tibia Strong Regionally restricted euxassay_011520_01
TS23: fibula Strong Regionally restricted euxassay_011520_01
TS23: ulna Strong Regionally restricted euxassay_011520_01
TS23: radius Strong Regionally restricted euxassay_011520_01
TS23: humerus Strong Regionally restricted euxassay_011520_01
Specimen euxassay_011520_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_011520_02
TS23: temporal bone Strong Regionally restricted euxassay_011520_02
TS23: vault of skull Strong Regionally restricted euxassay_011520_02
TS23: orbito-sphenoid Strong Regionally restricted euxassay_011520_02
TS23: exoccipital bone Strong Regionally restricted euxassay_011520_02
TS23: tibia Strong Regionally restricted euxassay_011520_02
TS23: fibula Strong Regionally restricted euxassay_011520_02
TS23: humerus Strong Regionally restricted euxassay_011520_02
TS23: radius Strong Regionally restricted euxassay_011520_02
TS23: ulna Strong Regionally restricted euxassay_011520_02
Specimen euxassay_011520_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_011520_03
TS23: orbito-sphenoid Strong Regionally restricted euxassay_011520_03
TS23: vault of skull Strong Regionally restricted euxassay_011520_03
TS23: temporal bone Strong Regionally restricted euxassay_011520_03
TS23: exoccipital bone Strong Regionally restricted euxassay_011520_03
TS23: tibia Strong Regionally restricted euxassay_011520_03
TS23: fibula Strong Regionally restricted euxassay_011520_03
TS23: humerus Strong Regionally restricted euxassay_011520_03
TS23: scapula Strong Regionally restricted euxassay_011520_03
TS23: forelimb digit 5 phalanx Strong Regionally restricted euxassay_011520_03
TS23: forelimb digit 5 metacarpal Strong Regionally restricted euxassay_011520_03
TS23: forelimb digit 4 metacarpal Strong Regionally restricted euxassay_011520_03
TS23: forelimb digit 4 phalanx Strong Regionally restricted euxassay_011520_03
Specimen euxassay_011520_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_011520_04
TS23: temporal bone Strong Regionally restricted euxassay_011520_04
TS23: exoccipital bone Strong Regionally restricted euxassay_011520_04
TS23: orbito-sphenoid Strong Regionally restricted euxassay_011520_04
TS23: vault of skull Strong Regionally restricted euxassay_011520_04
TS23: fibula Strong Regionally restricted euxassay_011520_04
TS23: tibia Strong Regionally restricted euxassay_011520_04
TS23: humerus Moderate Regionally restricted euxassay_011520_04
TS23: scapula Strong Regionally restricted euxassay_011520_04
TS23: mandible Moderate Regionally restricted euxassay_011520_04
Specimen euxassay_011520_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: temporal bone Strong Regionally restricted euxassay_011520_05
TS23: exoccipital bone Strong Regionally restricted euxassay_011520_05
TS23: orbito-sphenoid Strong Regionally restricted euxassay_011520_05
TS23: vault of skull Strong Regionally restricted euxassay_011520_05
TS23: humerus Moderate Regionally restricted euxassay_011520_05
TS23: scapula Strong Regionally restricted euxassay_011520_05
TS23: mandible Moderate Regionally restricted euxassay_011520_05
Specimen euxassay_011520_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_011520_06
TS23: orbito-sphenoid Strong Regionally restricted euxassay_011520_06
TS23: temporal bone Strong Regionally restricted euxassay_011520_06
TS23: exoccipital bone Strong Regionally restricted euxassay_011520_06
TS23: vault of skull Strong Regionally restricted euxassay_011520_06
TS23: hindlimb digit 1 metatarsal Strong Regionally restricted euxassay_011520_06
TS23: hindlimb digit 2 metatarsal Strong Regionally restricted euxassay_011520_06
TS23: hindlimb digit 3 metatarsal Strong Regionally restricted euxassay_011520_06
TS23: hindlimb digit 2 phalanx Strong Regionally restricted euxassay_011520_06
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_011520_06
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_011520_06
TS23: hindlimb digit 4 metatarsal Strong Regionally restricted euxassay_011520_06
TS23: humerus Strong Regionally restricted euxassay_011520_06
TS23: scapula Strong Regionally restricted euxassay_011520_06
TS23: mandible Strong Regionally restricted euxassay_011520_06
TS23: forelimb digit 1 phalanx Strong Regionally restricted euxassay_011520_06
TS23: forelimb digit 2 phalanx Strong Regionally restricted euxassay_011520_06
TS23: forelimb digit 3 phalanx Strong Regionally restricted euxassay_011520_06
Specimen euxassay_011520_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_011520_07
TS23: orbito-sphenoid Strong Regionally restricted euxassay_011520_07
TS23: exoccipital bone Strong Regionally restricted euxassay_011520_07
TS23: hindlimb digit 1 phalanx Strong Regionally restricted euxassay_011520_07
TS23: hindlimb digit 2 phalanx Strong Regionally restricted euxassay_011520_07
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_011520_07
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_011520_07
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_011520_07
TS23: hindlimb digit 1 metatarsal Strong Regionally restricted euxassay_011520_07
TS23: hindlimb digit 2 metatarsal Strong Regionally restricted euxassay_011520_07
TS23: humerus Strong Regionally restricted euxassay_011520_07
TS23: mandible Strong Regionally restricted euxassay_011520_07
TS23: maxilla Strong Regionally restricted euxassay_011520_07
TS23: otic capsule Strong Regionally restricted euxassay_011520_07
TS23: forelimb digit 2 phalanx Strong Regionally restricted euxassay_011520_07
TS23: forelimb digit 1 phalanx Strong Regionally restricted euxassay_011520_07
TS23: forelimb digit 3 phalanx Strong Regionally restricted euxassay_011520_07
TS23: forelimb digit 4 phalanx Strong Regionally restricted euxassay_011520_07
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_011520_07
Specimen euxassay_011520_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton Strong Regionally restricted euxassay_011520_08
TS23: rib Strong Regionally restricted euxassay_011520_08
TS23: orbito-sphenoid Strong Regionally restricted euxassay_011520_08
TS23: turbinate bone primordium Strong Regionally restricted euxassay_011520_08
TS23: exoccipital bone Strong Regionally restricted euxassay_011520_08
TS23: hindlimb digit 2 phalanx Strong Regionally restricted euxassay_011520_08
TS23: hindlimb digit 1 phalanx Strong Regionally restricted euxassay_011520_08
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_011520_08
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_011520_08
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_011520_08
TS23: femur Strong Regionally restricted euxassay_011520_08
TS23: clavicle Strong Regionally restricted euxassay_011520_08
TS23: mandible Strong Regionally restricted euxassay_011520_08
TS23: maxilla Strong Regionally restricted euxassay_011520_08
TS23: otic capsule Strong Regionally restricted euxassay_011520_08
TS23: forelimb digit 4 phalanx Strong Regionally restricted euxassay_011520_08
TS23: forelimb digit 3 phalanx Strong Regionally restricted euxassay_011520_08
TS23: forelimb digit 2 phalanx Strong Regionally restricted euxassay_011520_08
TS23: forelimb digit 1 phalanx Strong Regionally restricted euxassay_011520_08
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_011520_08
Specimen euxassay_011520_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_011520_09
TS23: axial skeleton Strong Regionally restricted euxassay_011520_09
TS23: orbito-sphenoid Strong Regionally restricted euxassay_011520_09
TS23: turbinate bone primordium Strong Regionally restricted euxassay_011520_09
TS23: femur Strong Regionally restricted euxassay_011520_09
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_011520_09
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_011520_09
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_011520_09
TS23: clavicle Strong Regionally restricted euxassay_011520_09
TS23: maxilla Strong Regionally restricted euxassay_011520_09
TS23: mandible Strong Regionally restricted euxassay_011520_09
TS23: otic capsule Strong Regionally restricted euxassay_011520_09
TS23: forelimb digit 1 phalanx Strong Regionally restricted euxassay_011520_09
TS23: forelimb digit 2 phalanx Strong Regionally restricted euxassay_011520_09
TS23: forelimb digit 3 phalanx Strong Regionally restricted euxassay_011520_09
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_011520_09
Specimen euxassay_011520_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton Strong Regionally restricted euxassay_011520_10
TS23: rib Strong Regionally restricted euxassay_011520_10
TS23: turbinate bone primordium Strong Regionally restricted euxassay_011520_10
TS23: orbito-sphenoid Strong Regionally restricted euxassay_011520_10
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_011520_10
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_011520_10
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_011520_10
TS23: pelvic girdle skeleton Strong Regionally restricted euxassay_011520_10
TS23: clavicle Strong Regionally restricted euxassay_011520_10
TS23: maxilla Strong Regionally restricted euxassay_011520_10
TS23: mandible Strong Regionally restricted euxassay_011520_10
TS23: otic capsule Strong Regionally restricted euxassay_011520_10
TS23: forelimb digit 2 phalanx Strong Regionally restricted euxassay_011520_10
TS23: forelimb digit 3 phalanx Strong Regionally restricted euxassay_011520_10
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_011520_10
Specimen euxassay_011520_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton Strong Regionally restricted euxassay_011520_11
TS23: rib Strong Regionally restricted euxassay_011520_11
TS23: orbito-sphenoid Strong Regionally restricted euxassay_011520_11
TS23: turbinate bone primordium Strong Regionally restricted euxassay_011520_11
TS23: pelvic girdle skeleton Strong Regionally restricted euxassay_011520_11
TS23: clavicle Strong Regionally restricted euxassay_011520_11
TS23: maxilla Strong Regionally restricted euxassay_011520_11
TS23: mandible Strong Regionally restricted euxassay_011520_11
TS23: forelimb digit 3 phalanx Strong Regionally restricted euxassay_011520_11
TS23: forelimb digit 2 phalanx Strong Regionally restricted euxassay_011520_11
TS23: submandibular gland primordium Weak Regionally restricted euxassay_011520_11
TS23: hyoid Strong Regionally restricted euxassay_011520_11
Specimen euxassay_011520_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_011520_12
TS23: axial skeleton Strong Regionally restricted euxassay_011520_12
TS23: orbito-sphenoid Strong Regionally restricted euxassay_011520_12
TS23: turbinate bone primordium Strong Regionally restricted euxassay_011520_12
TS23: pelvic girdle skeleton Strong Regionally restricted euxassay_011520_12
TS23: thyroid cartilage Strong Regionally restricted euxassay_011520_12
TS23: cricoid cartilage Strong Regionally restricted euxassay_011520_12
TS23: mandible Strong Regionally restricted euxassay_011520_12
TS23: maxilla Strong Regionally restricted euxassay_011520_12
TS23: nasal septum Strong Regionally restricted euxassay_011520_12
TS23: hyoid Strong Regionally restricted euxassay_011520_12
Specimen euxassay_011520_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_011520_13
TS23: axial skeleton Strong Regionally restricted euxassay_011520_13
TS23: orbito-sphenoid Strong Regionally restricted euxassay_011520_13
TS23: thyroid cartilage Strong Regionally restricted euxassay_011520_13
TS23: cricoid cartilage Strong Regionally restricted euxassay_011520_13
TS23: mandible Strong Regionally restricted euxassay_011520_13
TS23: maxilla Strong Regionally restricted euxassay_011520_13
TS23: bladder Moderate Regionally restricted euxassay_011520_13
TS23: nasal septum Strong Regionally restricted euxassay_011520_13
Specimen euxassay_011520_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: sternum Strong Regionally restricted euxassay_011520_14
TS23: axial skeleton Strong Regionally restricted euxassay_011520_14
TS23: orbito-sphenoid Strong Regionally restricted euxassay_011520_14
TS23: thyroid cartilage Strong Regionally restricted euxassay_011520_14
TS23: trachea Strong Regionally restricted euxassay_011520_14
TS23: maxilla Strong Regionally restricted euxassay_011520_14
TS23: mandible Strong Regionally restricted euxassay_011520_14
TS23: bladder Moderate Regionally restricted euxassay_011520_14
TS23: axial skeleton tail region Strong Regionally restricted euxassay_011520_14
TS23: nasal septum Strong Regionally restricted euxassay_011520_14
TS23: hyoid Moderate Regionally restricted euxassay_011520_14
Specimen euxassay_011520_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: sternum Strong Regionally restricted euxassay_011520_15
TS23: axial skeleton Strong Regionally restricted euxassay_011520_15
TS23: orbito-sphenoid Strong Regionally restricted euxassay_011520_15
TS23: thyroid cartilage Strong Regionally restricted euxassay_011520_15
TS23: cricoid cartilage Strong Regionally restricted euxassay_011520_15
TS23: trachea Strong Regionally restricted euxassay_011520_15
TS23: bladder Moderate Regionally restricted euxassay_011520_15
TS23: axial skeleton tail region Strong Regionally restricted euxassay_011520_15
TS23: nasal septum Strong Regionally restricted euxassay_011520_15
TS23: hyoid Moderate Regionally restricted euxassay_011520_15
Specimen euxassay_011520_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: sternum Strong Regionally restricted euxassay_011520_16
TS23: rib Strong Regionally restricted euxassay_011520_16
TS23: axial skeleton Strong Regionally restricted euxassay_011520_16
TS23: thyroid cartilage Strong Regionally restricted euxassay_011520_16
TS23: bladder Moderate Regionally restricted euxassay_011520_16
TS23: axial skeleton tail region Strong Regionally restricted euxassay_011520_16
TS23: nasal septum Strong Regionally restricted euxassay_011520_16
TS23: hyoid Moderate Regionally restricted euxassay_011520_16
Specimen euxassay_011520_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton Strong Regionally restricted euxassay_011520_17
TS23: rib Strong Regionally restricted euxassay_011520_17
TS23: exoccipital bone Strong Regionally restricted euxassay_011520_17
TS23: turbinate bone primordium Strong Regionally restricted euxassay_011520_17
TS23: clavicle Strong Regionally restricted euxassay_011520_17
TS23: otic capsule Strong Regionally restricted euxassay_011520_17
TS23: axial skeleton tail region Strong Regionally restricted euxassay_011520_17
TS23: nasal septum Strong Regionally restricted euxassay_011520_17
Specimen euxassay_011520_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_011520_18
TS23: axial skeleton Strong Regionally restricted euxassay_011520_18
TS23: orbito-sphenoid Strong Regionally restricted euxassay_011520_18
TS23: exoccipital bone Strong Regionally restricted euxassay_011520_18
TS23: pelvic girdle skeleton Strong Regionally restricted euxassay_011520_18
TS23: clavicle Strong Regionally restricted euxassay_011520_18
TS23: mandible Strong Regionally restricted euxassay_011520_18
TS23: maxilla Strong Regionally restricted euxassay_011520_18
TS23: otic capsule Strong Regionally restricted euxassay_011520_18
TS23: naris Strong Regionally restricted euxassay_011520_18
Specimen euxassay_011520_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton Strong Regionally restricted euxassay_011520_19
TS23: rib Strong Regionally restricted euxassay_011520_19
TS23: turbinate bone primordium Strong Regionally restricted euxassay_011520_19
TS23: orbito-sphenoid Strong Regionally restricted euxassay_011520_19
TS23: temporal bone Strong Regionally restricted euxassay_011520_19
TS23: exoccipital bone Strong Regionally restricted euxassay_011520_19
TS23: pelvic girdle skeleton Strong Regionally restricted euxassay_011520_19
TS23: clavicle Strong Regionally restricted euxassay_011520_19
TS23: mandible Strong Regionally restricted euxassay_011520_19
TS23: maxilla Strong Regionally restricted euxassay_011520_19
TS23: otic capsule Strong Regionally restricted euxassay_011520_19
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_011520_19
Specimen euxassay_011520_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_011520_20
TS23: orbito-sphenoid Strong Regionally restricted euxassay_011520_20
TS23: turbinate bone primordium Strong Regionally restricted euxassay_011520_20
TS23: temporal bone Strong Regionally restricted euxassay_011520_20
TS23: exoccipital bone Strong Regionally restricted euxassay_011520_20
TS23: pelvic girdle skeleton Strong Regionally restricted euxassay_011520_20
TS23: maxilla Strong Regionally restricted euxassay_011520_20
TS23: mandible Strong Regionally restricted euxassay_011520_20
TS23: submandibular gland primordium Weak Regionally restricted euxassay_011520_20
Specimen euxassay_011520_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_011520_21
TS23: orbito-sphenoid Strong Regionally restricted euxassay_011520_21
TS23: turbinate bone primordium Strong Regionally restricted euxassay_011520_21
TS23: temporal bone Strong Regionally restricted euxassay_011520_21
TS23: exoccipital bone Strong Regionally restricted euxassay_011520_21
TS23: pelvic girdle skeleton Strong Regionally restricted euxassay_011520_21
TS23: humerus Strong Regionally restricted euxassay_011520_21
TS23: maxilla Strong Regionally restricted euxassay_011520_21
TS23: mandible Strong Regionally restricted euxassay_011520_21
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_011520_21
Specimen euxassay_011520_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_011520_22
TS23: temporal bone Strong Regionally restricted euxassay_011520_22
TS23: exoccipital bone Strong Regionally restricted euxassay_011520_22
TS23: orbito-sphenoid Strong Regionally restricted euxassay_011520_22
TS23: femur Strong Regionally restricted euxassay_011520_22
TS23: humerus Strong Regionally restricted euxassay_011520_22
TS23: maxilla Strong Regionally restricted euxassay_011520_22
TS23: mandible Strong Regionally restricted euxassay_011520_22
Specimen euxassay_011520_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_011520_23
TS23: orbito-sphenoid Strong Regionally restricted euxassay_011520_23
TS23: temporal bone Strong Regionally restricted euxassay_011520_23
TS23: exoccipital bone Strong Regionally restricted euxassay_011520_23
TS23: femur Strong Regionally restricted euxassay_011520_23
TS23: hindlimb digit 2 phalanx Strong Regionally restricted euxassay_011520_23
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_011520_23
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_011520_23
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_011520_23
TS23: hindlimb digit 2 metatarsal Strong Regionally restricted euxassay_011520_23
TS23: hindlimb digit 3 metatarsal Strong Regionally restricted euxassay_011520_23
TS23: humerus Strong Regionally restricted euxassay_011520_23
TS23: scapula Strong Regionally restricted euxassay_011520_23
TS23: mandible Strong Regionally restricted euxassay_011520_23
TS23: maxilla Strong Regionally restricted euxassay_011520_23
TS23: forelimb digit 3 phalanx Strong Regionally restricted euxassay_011520_23
TS23: forelimb digit 2 phalanx Strong Regionally restricted euxassay_011520_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory