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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823993
Gene symbol: Col4a6
Gene name: collagen, type IV, alpha 6
Probe: T31762
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_009999_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_009999_01
TS23: vault of skull Moderate Regionally restricted euxassay_009999_01
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_009999_01
TS23: temporal bone petrous part Moderate Regionally restricted euxassay_009999_01
TS23: lens Strong Regionally restricted euxassay_009999_01
TS23: fibula Moderate Regionally restricted euxassay_009999_01
TS23: tibia Moderate Regionally restricted euxassay_009999_01
TS23: femur Moderate Regionally restricted euxassay_009999_01
TS23: humerus Weak Regionally restricted euxassay_009999_01
Specimen euxassay_009999_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_009999_02
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_009999_02
TS23: vault of skull Moderate Regionally restricted euxassay_009999_02
TS23: temporal bone petrous part Moderate Regionally restricted euxassay_009999_02
TS23: lens Strong Regionally restricted euxassay_009999_02
TS23: femur Weak Regionally restricted euxassay_009999_02
TS23: humerus Weak Regionally restricted euxassay_009999_02
Specimen euxassay_009999_03: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_009999_03
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_009999_03
TS23: temporal bone petrous part Moderate Regionally restricted euxassay_009999_03
TS23: vault of skull Moderate Regionally restricted euxassay_009999_03
TS23: basioccipital bone Moderate Regionally restricted euxassay_009999_03
TS23: femur Weak Regionally restricted euxassay_009999_03
TS23: urinary system Weak Regionally restricted euxassay_009999_03
TS23: mesonephros Present euxassay_009999_03
Specimen euxassay_009999_04: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_009999_04
TS23: mandible Moderate Regionally restricted euxassay_009999_04
TS23: basioccipital bone Moderate Regionally restricted euxassay_009999_04
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_009999_04
TS23: temporal bone petrous part Moderate Regionally restricted euxassay_009999_04
TS23: vault of skull Moderate Regionally restricted euxassay_009999_04
TS23: femur Weak Regionally restricted euxassay_009999_04
TS23: hindlimb digit 2 phalanx Weak Regionally restricted euxassay_009999_04
TS23: hindlimb digit 3 phalanx Weak Regionally restricted euxassay_009999_04
TS23: hindlimb digit 4 phalanx Weak Regionally restricted euxassay_009999_04
TS23: hindlimb digit 5 phalanx Weak Regionally restricted euxassay_009999_04
TS23: hindlimb digit 1 phalanx Weak Regionally restricted euxassay_009999_04
TS23: clavicle Weak Regionally restricted euxassay_009999_04
TS23: urinary system Weak Regionally restricted euxassay_009999_04
TS23: mesonephros Present euxassay_009999_04
TS23: telencephalon meninges Moderate Regionally restricted euxassay_009999_04
TS23: midbrain meninges Moderate Regionally restricted euxassay_009999_04
TS23: hindbrain meninges Moderate Regionally restricted euxassay_009999_04
Specimen euxassay_009999_05: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_009999_05
TS23: mandible Moderate Regionally restricted euxassay_009999_05
TS23: maxilla Moderate Regionally restricted euxassay_009999_05
TS23: basioccipital bone Moderate Regionally restricted euxassay_009999_05
TS23: temporal bone petrous part Moderate Regionally restricted euxassay_009999_05
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_009999_05
TS23: clavicle Weak Regionally restricted euxassay_009999_05
TS23: urinary system Weak Regionally restricted euxassay_009999_05
TS23: mesonephros Present euxassay_009999_05
TS23: telencephalon meninges Moderate Regionally restricted euxassay_009999_05
TS23: hindbrain meninges Moderate Regionally restricted euxassay_009999_05
TS23: midbrain meninges Moderate Regionally restricted euxassay_009999_05
Specimen euxassay_009999_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_009999_06
TS23: mandible Moderate Regionally restricted euxassay_009999_06
TS23: maxilla Moderate Regionally restricted euxassay_009999_06
TS23: vault of skull Moderate Regionally restricted euxassay_009999_06
TS23: hindlimb digit 1 phalanx Weak Regionally restricted euxassay_009999_06
TS23: hindlimb digit 2 phalanx Weak Regionally restricted euxassay_009999_06
TS23: hindlimb digit 3 phalanx Weak Regionally restricted euxassay_009999_06
TS23: hindlimb digit 4 phalanx Weak Regionally restricted euxassay_009999_06
TS23: hindlimb digit 5 phalanx Weak Regionally restricted euxassay_009999_06
TS23: submandibular gland primordium Weak Regionally restricted euxassay_009999_06
TS23: clavicle Weak Regionally restricted euxassay_009999_06
TS23: urinary system Weak Regionally restricted euxassay_009999_06
TS23: mesonephros Present euxassay_009999_06
TS23: diencephalon meninges Moderate Regionally restricted euxassay_009999_06
TS23: telencephalon meninges Moderate Regionally restricted euxassay_009999_06
TS23: midbrain meninges Moderate Regionally restricted euxassay_009999_06
TS23: hindbrain meninges Moderate Regionally restricted euxassay_009999_06
TS23: otic capsule Weak Regionally restricted euxassay_009999_06
Specimen euxassay_009999_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Moderate Regionally restricted euxassay_009999_07
TS23: maxilla Moderate Regionally restricted euxassay_009999_07
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_009999_07
TS23: submandibular gland primordium Weak Regionally restricted euxassay_009999_07
TS23: clavicle Weak Regionally restricted euxassay_009999_07
TS23: diencephalon meninges Moderate Regionally restricted euxassay_009999_07
TS23: telencephalon meninges Moderate Regionally restricted euxassay_009999_07
TS23: hindbrain meninges Moderate Regionally restricted euxassay_009999_07
TS23: midbrain meninges Moderate Regionally restricted euxassay_009999_07
TS23: spinal cord meninges Moderate Regionally restricted euxassay_009999_07
TS23: otic capsule Weak Regionally restricted euxassay_009999_07
Specimen euxassay_009999_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Moderate Regionally restricted euxassay_009999_08
TS23: maxilla Moderate Regionally restricted euxassay_009999_08
TS23: turbinate bone primordium Weak Regionally restricted euxassay_009999_08
TS23: submandibular gland primordium Weak Regionally restricted euxassay_009999_08
TS23: clavicle Weak Regionally restricted euxassay_009999_08
TS23: diencephalon meninges Moderate Regionally restricted euxassay_009999_08
TS23: telencephalon meninges Moderate Regionally restricted euxassay_009999_08
TS23: hindbrain meninges Moderate Regionally restricted euxassay_009999_08
TS23: midbrain meninges Moderate Regionally restricted euxassay_009999_08
TS23: spinal cord meninges Moderate Regionally restricted euxassay_009999_08
TS23: otic capsule Weak Regionally restricted euxassay_009999_08
TS23: trunk mesenchyme Weak Regionally restricted euxassay_009999_08
Specimen euxassay_009999_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Moderate Regionally restricted euxassay_009999_09
TS23: maxilla Moderate Regionally restricted euxassay_009999_09
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_009999_09
TS23: diencephalon meninges Moderate Regionally restricted euxassay_009999_09
TS23: telencephalon meninges Moderate Regionally restricted euxassay_009999_09
TS23: hindbrain meninges Moderate Regionally restricted euxassay_009999_09
TS23: midbrain meninges Moderate Regionally restricted euxassay_009999_09
TS23: spinal cord meninges Moderate Regionally restricted euxassay_009999_09
TS23: otic capsule Weak Regionally restricted euxassay_009999_09
TS23: trunk mesenchyme Weak Regionally restricted euxassay_009999_09
Specimen euxassay_009999_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Weak Regionally restricted euxassay_009999_10
TS23: maxilla Weak Regionally restricted euxassay_009999_10
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_009999_10
TS23: diencephalon meninges Moderate Regionally restricted euxassay_009999_10
TS23: telencephalon meninges Moderate Regionally restricted euxassay_009999_10
TS23: hindbrain meninges Moderate Regionally restricted euxassay_009999_10
TS23: midbrain meninges Moderate Regionally restricted euxassay_009999_10
TS23: spinal cord meninges Moderate Regionally restricted euxassay_009999_10
TS23: trunk mesenchyme Weak Regionally restricted euxassay_009999_10
Specimen euxassay_009999_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut mesenchyme Moderate Regionally restricted euxassay_009999_11
TS23: diencephalon meninges Moderate Regionally restricted euxassay_009999_11
TS23: telencephalon meninges Moderate Regionally restricted euxassay_009999_11
TS23: hindbrain meninges Moderate Regionally restricted euxassay_009999_11
TS23: midbrain meninges Moderate Regionally restricted euxassay_009999_11
TS23: spinal cord meninges Moderate Regionally restricted euxassay_009999_11
TS23: trunk mesenchyme Weak Regionally restricted euxassay_009999_11
Specimen euxassay_009999_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut mesenchyme Moderate Regionally restricted euxassay_009999_12
TS23: diencephalon meninges Moderate Regionally restricted euxassay_009999_12
TS23: telencephalon meninges Moderate Regionally restricted euxassay_009999_12
TS23: hindbrain meninges Moderate Regionally restricted euxassay_009999_12
TS23: midbrain meninges Moderate Regionally restricted euxassay_009999_12
TS23: spinal cord meninges Moderate Regionally restricted euxassay_009999_12
TS23: trunk mesenchyme Weak Regionally restricted euxassay_009999_12
Specimen euxassay_009999_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_009999_13
TS23: midgut mesenchyme Moderate Regionally restricted euxassay_009999_13
TS23: diencephalon meninges Moderate Regionally restricted euxassay_009999_13
TS23: telencephalon meninges Moderate Regionally restricted euxassay_009999_13
TS23: hindbrain meninges Moderate Regionally restricted euxassay_009999_13
TS23: midbrain meninges Moderate Regionally restricted euxassay_009999_13
TS23: spinal cord meninges Moderate Regionally restricted euxassay_009999_13
TS23: trunk mesenchyme Weak Regionally restricted euxassay_009999_13
Specimen euxassay_009999_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: nasal septum Moderate Regionally restricted euxassay_009999_14
TS23: midgut mesenchyme Moderate Regionally restricted euxassay_009999_14
TS23: diencephalon meninges Moderate Regionally restricted euxassay_009999_14
TS23: telencephalon meninges Moderate Regionally restricted euxassay_009999_14
TS23: hindbrain meninges Moderate Regionally restricted euxassay_009999_14
TS23: midbrain meninges Moderate Regionally restricted euxassay_009999_14
TS23: spinal cord meninges Moderate Regionally restricted euxassay_009999_14
TS23: trunk mesenchyme Weak Regionally restricted euxassay_009999_14
Specimen euxassay_009999_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_009999_15
TS23: diencephalon meninges Moderate Regionally restricted euxassay_009999_15
TS23: telencephalon meninges Moderate Regionally restricted euxassay_009999_15
TS23: hindbrain meninges Moderate Regionally restricted euxassay_009999_15
TS23: midbrain meninges Moderate Regionally restricted euxassay_009999_15
TS23: otic capsule Weak Regionally restricted euxassay_009999_15
Specimen euxassay_009999_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Moderate Regionally restricted euxassay_009999_16
TS23: maxilla Moderate Regionally restricted euxassay_009999_16
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_009999_16
TS23: submandibular gland primordium Weak Regionally restricted euxassay_009999_16
TS23: clavicle Weak Regionally restricted euxassay_009999_16
TS23: diencephalon meninges Moderate Regionally restricted euxassay_009999_16
TS23: telencephalon meninges Moderate Regionally restricted euxassay_009999_16
TS23: hindbrain meninges Moderate Regionally restricted euxassay_009999_16
TS23: midbrain meninges Moderate Regionally restricted euxassay_009999_16
TS23: otic capsule Weak Regionally restricted euxassay_009999_16
Specimen euxassay_009999_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_009999_17
TS23: mandible Moderate Regionally restricted euxassay_009999_17
TS23: maxilla Moderate Regionally restricted euxassay_009999_17
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_009999_17
TS23: submandibular gland primordium Weak Regionally restricted euxassay_009999_17
TS23: clavicle Moderate Regionally restricted euxassay_009999_17
TS23: urinary system Weak Regionally restricted euxassay_009999_17
TS23: mesonephros Present euxassay_009999_17
TS23: diencephalon meninges Moderate Regionally restricted euxassay_009999_17
TS23: telencephalon meninges Moderate Regionally restricted euxassay_009999_17
TS23: hindbrain meninges Moderate Regionally restricted euxassay_009999_17
TS23: midbrain meninges Moderate Regionally restricted euxassay_009999_17
TS23: otic capsule Moderate Regionally restricted euxassay_009999_17
Specimen euxassay_009999_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_009999_18
TS23: mandible Moderate Regionally restricted euxassay_009999_18
TS23: maxilla Moderate Regionally restricted euxassay_009999_18
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_009999_18
TS23: submandibular gland primordium Weak Regionally restricted euxassay_009999_18
TS23: clavicle Moderate Regionally restricted euxassay_009999_18
TS23: urinary system Weak Regionally restricted euxassay_009999_18
TS23: mesonephros Present euxassay_009999_18
TS23: diencephalon meninges Moderate Regionally restricted euxassay_009999_18
TS23: telencephalon meninges Moderate Regionally restricted euxassay_009999_18
TS23: hindbrain meninges Moderate Regionally restricted euxassay_009999_18
TS23: midbrain meninges Moderate Regionally restricted euxassay_009999_18
Specimen euxassay_009999_19: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_009999_19
TS23: mandible Moderate Regionally restricted euxassay_009999_19
TS23: temporal bone petrous part Moderate Regionally restricted euxassay_009999_19
TS23: basioccipital bone Moderate Regionally restricted euxassay_009999_19
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_009999_19
TS23: turbinate bone primordium Weak Regionally restricted euxassay_009999_19
TS23: submandibular gland primordium Weak Regionally restricted euxassay_009999_19
TS23: clavicle Moderate Regionally restricted euxassay_009999_19
TS23: urinary system Weak Regionally restricted euxassay_009999_19
TS23: mesonephros Present euxassay_009999_19
TS23: telencephalon meninges Moderate Regionally restricted euxassay_009999_19
TS23: hindbrain meninges Moderate Regionally restricted euxassay_009999_19
TS23: midbrain meninges Moderate Regionally restricted euxassay_009999_19
Specimen euxassay_009999_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_009999_20
TS23: mandible Moderate Regionally restricted euxassay_009999_20
TS23: temporal bone petrous part Weak Regionally restricted euxassay_009999_20
TS23: vault of skull Weak Regionally restricted euxassay_009999_20
TS23: basioccipital bone Weak Regionally restricted euxassay_009999_20
TS23: orbito-sphenoid Weak Regionally restricted euxassay_009999_20
TS23: femur Weak Regionally restricted euxassay_009999_20
TS23: hindlimb digit 5 phalanx Weak Regionally restricted euxassay_009999_20
TS23: hindlimb digit 4 phalanx Weak Regionally restricted euxassay_009999_20
TS23: hindlimb digit 3 phalanx Weak Regionally restricted euxassay_009999_20
TS23: hindlimb digit 2 phalanx Weak Regionally restricted euxassay_009999_20
TS23: hindlimb digit 1 phalanx Weak Regionally restricted euxassay_009999_20
TS23: turbinate bone primordium Weak Regionally restricted euxassay_009999_20
TS23: clavicle Moderate Regionally restricted euxassay_009999_20
TS23: telencephalon meninges Moderate Regionally restricted euxassay_009999_20
TS23: hindbrain meninges Moderate Regionally restricted euxassay_009999_20
Specimen euxassay_009999_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_009999_21
TS23: mandible Moderate Regionally restricted euxassay_009999_21
TS23: maxilla Moderate Regionally restricted euxassay_009999_21
TS23: vault of skull Weak Regionally restricted euxassay_009999_21
TS23: temporal bone petrous part Weak Regionally restricted euxassay_009999_21
TS23: orbito-sphenoid Weak Regionally restricted euxassay_009999_21
TS23: hindlimb digit 1 phalanx Weak Regionally restricted euxassay_009999_21
TS23: hindlimb digit 2 phalanx Weak Regionally restricted euxassay_009999_21
TS23: hindlimb digit 3 phalanx Weak Regionally restricted euxassay_009999_21
TS23: hindlimb digit 4 phalanx Weak Regionally restricted euxassay_009999_21
TS23: hindlimb digit 5 phalanx Weak Regionally restricted euxassay_009999_21
TS23: femur Weak Regionally restricted euxassay_009999_21
TS23: telencephalon meninges Moderate Regionally restricted euxassay_009999_21
TS23: hindbrain meninges Moderate Regionally restricted euxassay_009999_21
Specimen euxassay_009999_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_009999_22
TS23: orbito-sphenoid Weak Regionally restricted euxassay_009999_22
TS23: temporal bone petrous part Weak Regionally restricted euxassay_009999_22
TS23: vault of skull Weak Regionally restricted euxassay_009999_22
Specimen euxassay_009999_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: temporal bone petrous part Weak Regionally restricted euxassay_009999_23
TS23: orbito-sphenoid Weak Regionally restricted euxassay_009999_23
TS23: humerus Weak Regionally restricted euxassay_009999_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory