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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823643
Gene symbol: Casp6
Gene name: caspase 6
Probe: MGC clone 5873
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_004793_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Weak Regionally restricted euxassay_004793_01
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_004793_01
Specimen euxassay_004793_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_004793_02
TS23: stomach Weak Regionally restricted euxassay_004793_02
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_004793_02
Specimen euxassay_004793_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_004793_03
TS23: stomach Weak Regionally restricted euxassay_004793_03
Specimen euxassay_004793_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_004793_04
TS23: testis Weak Spotted euxassay_004793_04
TS23: stomach Weak Regionally restricted euxassay_004793_04
Specimen euxassay_004793_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_004793_05
TS23: testis Weak Spotted euxassay_004793_05
TS23: stomach Weak Regionally restricted euxassay_004793_05
Specimen euxassay_004793_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_004793_06
TS23: metanephros Weak Regionally restricted euxassay_004793_06
TS23: testis Weak Spotted euxassay_004793_06
TS23: stomach Weak Regionally restricted euxassay_004793_06
TS23: vibrissa Weak Regionally restricted euxassay_004793_06
TS23: inner ear Weak Regionally restricted euxassay_004793_06
Specimen euxassay_004793_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_004793_07
TS23: metanephros Weak Regionally restricted euxassay_004793_07
TS23: testis Weak Spotted euxassay_004793_07
TS23: pancreas Weak Regionally restricted euxassay_004793_07
TS23: stomach Weak Regionally restricted euxassay_004793_07
TS23: vibrissa Weak Regionally restricted euxassay_004793_07
TS23: inner ear Weak Regionally restricted euxassay_004793_07
Specimen euxassay_004793_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_004793_08
TS23: metanephros Weak Regionally restricted euxassay_004793_08
TS23: pancreas Weak Regionally restricted euxassay_004793_08
TS23: stomach Weak Regionally restricted euxassay_004793_08
TS23: vibrissa Weak Regionally restricted euxassay_004793_08
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_004793_08
TS23: inner ear Weak Regionally restricted euxassay_004793_08
Specimen euxassay_004793_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thymus primordium Moderate Regionally restricted euxassay_004793_09
TS23: heart Moderate Regionally restricted euxassay_004793_09
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004793_09
TS23: lung Weak Regionally restricted euxassay_004793_09
TS23: pancreas Weak Regionally restricted euxassay_004793_09
TS23: vibrissa Weak Regionally restricted euxassay_004793_09
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_004793_09
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_004793_09
TS23: cerebellum intraventricular portion Weak Regionally restricted euxassay_004793_09
TS23: pons ventricular layer Weak Regionally restricted euxassay_004793_09
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_004793_09
TS23: adenohypophysis Weak Regionally restricted euxassay_004793_09
Specimen euxassay_004793_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thymus primordium Moderate Regionally restricted euxassay_004793_10
TS23: midgut Moderate Regionally restricted euxassay_004793_10
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004793_10
TS23: lung Weak Regionally restricted euxassay_004793_10
TS23: pancreas Weak Regionally restricted euxassay_004793_10
TS23: lower jaw incisor Moderate Regionally restricted euxassay_004793_10
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_004793_10
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_004793_10
TS23: pons ventricular layer Weak Regionally restricted euxassay_004793_10
TS23: cerebellum intraventricular portion Weak Regionally restricted euxassay_004793_10
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_004793_10
TS23: adenohypophysis Weak Regionally restricted euxassay_004793_10
Specimen euxassay_004793_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thymus primordium Moderate Regionally restricted euxassay_004793_11
TS23: heart Moderate Regionally restricted euxassay_004793_11
TS23: midgut Moderate Regionally restricted euxassay_004793_11
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004793_11
TS23: lung Weak Regionally restricted euxassay_004793_11
TS23: pancreas Weak Regionally restricted euxassay_004793_11
TS23: lower jaw incisor Moderate Regionally restricted euxassay_004793_11
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_004793_11
TS23: diencephalon lateral wall ventricular layer Weak Regionally restricted euxassay_004793_11
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_004793_11
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_004793_11
TS23: pons ventricular layer Weak Regionally restricted euxassay_004793_11
TS23: cerebellum intraventricular portion Weak Regionally restricted euxassay_004793_11
TS23: adenohypophysis Weak Regionally restricted euxassay_004793_11
Specimen euxassay_004793_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thymus primordium Moderate Regionally restricted euxassay_004793_12
TS23: heart Moderate Regionally restricted euxassay_004793_12
TS23: midgut Moderate Regionally restricted euxassay_004793_12
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004793_12
TS23: lung Weak Regionally restricted euxassay_004793_12
TS23: bladder Moderate Regionally restricted euxassay_004793_12
TS23: lower jaw incisor Moderate Regionally restricted euxassay_004793_12
TS23: upper jaw incisor Moderate Regionally restricted euxassay_004793_12
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_004793_12
TS23: diencephalon lateral wall ventricular layer Weak Regionally restricted euxassay_004793_12
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_004793_12
TS23: cerebellum intraventricular portion Weak Regionally restricted euxassay_004793_12
TS23: pons ventricular layer Weak Regionally restricted euxassay_004793_12
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_004793_12
TS23: adenohypophysis Weak Regionally restricted euxassay_004793_12
Specimen euxassay_004793_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_004793_13
TS23: nasal cavity respiratory epithelium Moderate Regionally restricted euxassay_004793_13
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004793_13
TS23: lung Moderate Regionally restricted euxassay_004793_13
TS23: bladder Moderate Regionally restricted euxassay_004793_13
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_004793_13
TS23: diencephalon lateral wall ventricular layer Weak Regionally restricted euxassay_004793_13
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_004793_13
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_004793_13
TS23: cerebellum intraventricular portion Weak Regionally restricted euxassay_004793_13
TS23: pons ventricular layer Weak Regionally restricted euxassay_004793_13
TS23: pons mantle layer Weak Regionally restricted euxassay_004793_13
TS23: adenohypophysis Weak Regionally restricted euxassay_004793_13
Specimen euxassay_004793_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_004793_14
TS23: lung Moderate Regionally restricted euxassay_004793_14
TS23: bladder Moderate Regionally restricted euxassay_004793_14
TS23: urethra Moderate Regionally restricted euxassay_004793_14 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_004793_14
TS23: diencephalon lateral wall ventricular layer Weak Regionally restricted euxassay_004793_14
TS23: pons ventricular layer Weak Regionally restricted euxassay_004793_14
TS23: cerebellum intraventricular portion Weak Regionally restricted euxassay_004793_14
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_004793_14
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_004793_14
TS23: adenohypophysis Weak Regionally restricted euxassay_004793_14
TS23: inner ear Weak Regionally restricted euxassay_004793_14
Specimen euxassay_004793_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_004793_15
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004793_15
TS23: lung Moderate Regionally restricted euxassay_004793_15
TS23: metanephros Weak Regionally restricted euxassay_004793_15
TS23: urethra Moderate Regionally restricted euxassay_004793_15 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: lower jaw incisor Moderate Regionally restricted euxassay_004793_15
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_004793_15
TS23: pons ventricular layer Weak Regionally restricted euxassay_004793_15
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_004793_15
TS23: cerebellum intraventricular portion Weak Regionally restricted euxassay_004793_15
TS23: inner ear Weak Regionally restricted euxassay_004793_15
Specimen euxassay_004793_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_004793_16
TS23: lung Weak Regionally restricted euxassay_004793_16
TS23: metanephros Weak Regionally restricted euxassay_004793_16
TS23: upper jaw incisor Weak Regionally restricted euxassay_004793_16
TS23: lower jaw incisor Weak Regionally restricted euxassay_004793_16
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_004793_16
TS23: pons ventricular layer Weak Regionally restricted euxassay_004793_16
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_004793_16
TS23: cerebellum intraventricular portion Weak Regionally restricted euxassay_004793_16
TS23: inner ear Weak Regionally restricted euxassay_004793_16
Specimen euxassay_004793_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_004793_17
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004793_17
TS23: nasal cavity respiratory epithelium Moderate Regionally restricted euxassay_004793_17
TS23: naris Moderate Regionally restricted euxassay_004793_17
TS23: lung Moderate Regionally restricted euxassay_004793_17
TS23: metanephros Moderate Regionally restricted euxassay_004793_17
TS23: upper jaw incisor Weak Regionally restricted euxassay_004793_17
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_004793_17
TS23: pons ventricular layer Weak Regionally restricted euxassay_004793_17
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_004793_17
TS23: cerebellum intraventricular portion Weak Regionally restricted euxassay_004793_17
TS23: inner ear Weak Regionally restricted euxassay_004793_17
Specimen euxassay_004793_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_004793_18
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004793_18
TS23: lung Moderate Regionally restricted euxassay_004793_18
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_004793_18
TS23: pons ventricular layer Weak Regionally restricted euxassay_004793_18
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_004793_18
TS23: cerebellum intraventricular portion Weak Regionally restricted euxassay_004793_18
TS23: inner ear Weak Regionally restricted euxassay_004793_18
Specimen euxassay_004793_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004793_19
TS23: lung Weak Regionally restricted euxassay_004793_19
TS23: testis Weak Spotted euxassay_004793_19
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_004793_19
Specimen euxassay_004793_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_004793_20
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_004793_20
Specimen euxassay_004793_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_004793_21
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_004793_21
TS23: inner ear Moderate Regionally restricted euxassay_004793_21
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_004793_21
Specimen euxassay_004793_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Weak Regionally restricted euxassay_004793_22
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_004793_22
Specimen euxassay_004793_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Weak Regionally restricted euxassay_004793_23
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_004793_23
Specimen euxassay_004793_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_004793_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory