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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823435
Gene symbol: Bcan
Gene name: brevican
Probe: T30539
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_010467_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons ventricular layer Strong Regionally restricted euxassay_010467_05
Specimen euxassay_010467_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pons ventricular layer Strong Regionally restricted euxassay_010467_06
TS23: ventral grey horn Strong Single cells euxassay_010467_06
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_010467_06
TS23: hippocampus Present euxassay_010467_06
TS23: telencephalon mantle layer Strong Single cells euxassay_010467_06
Specimen euxassay_010467_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_010467_07
TS23: pons ventricular layer Strong Regionally restricted euxassay_010467_07
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_010467_07
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010467_07
TS23: pons mantle layer Strong Single cells euxassay_010467_07
TS23: ventral grey horn Strong Single cells euxassay_010467_07
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_010467_07
TS23: hippocampus Present euxassay_010467_07
TS23: telencephalon mantle layer Strong Single cells euxassay_010467_07
Specimen euxassay_010467_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pons ventricular layer Strong Regionally restricted euxassay_010467_08
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_010467_08
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_010467_08
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010467_08
TS23: pons mantle layer Strong Single cells euxassay_010467_08
TS23: ventral grey horn Strong Single cells euxassay_010467_08
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010467_08
TS23: hippocampus Present euxassay_010467_08
TS23: telencephalon mantle layer Strong Single cells euxassay_010467_08
Specimen euxassay_010467_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pons ventricular layer Strong Regionally restricted euxassay_010467_09
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_010467_09
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_010467_09
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010467_09
TS23: ventral grey horn Strong Single cells euxassay_010467_09
TS23: spinal cord ventricular layer Strong Single cells euxassay_010467_09
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010467_09
TS23: hippocampus Present euxassay_010467_09
TS23: telencephalon mantle layer Strong Single cells euxassay_010467_09
Specimen euxassay_010467_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_010467_10
TS23: pons ventricular layer Strong Regionally restricted euxassay_010467_10
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_010467_10
TS23: pons mantle layer Strong Single cells euxassay_010467_10
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010467_10
TS23: spinal cord ventricular layer Strong Single cells euxassay_010467_10
TS23: ventral grey horn Strong Single cells euxassay_010467_10
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010467_10
TS23: hippocampus Present euxassay_010467_10
TS23: telencephalon mantle layer Strong Single cells euxassay_010467_10
Specimen euxassay_010467_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_010467_11
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_010467_11
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010467_11
TS23: pons mantle layer Strong Single cells euxassay_010467_11
TS23: ventral grey horn Strong Single cells euxassay_010467_11
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_010467_11
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_010467_11
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010467_11
TS23: hippocampus Present euxassay_010467_11
Specimen euxassay_010467_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_010467_12
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010467_12
TS23: pons mantle layer Strong Single cells euxassay_010467_12
TS23: ventral grey horn Strong Single cells euxassay_010467_12
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_010467_12
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_010467_12
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010467_12
Specimen euxassay_010467_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_010467_13
TS23: pons ventricular layer Strong Regionally restricted euxassay_010467_13
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_010467_13
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010467_13
TS23: pons mantle layer Strong Single cells euxassay_010467_13
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_010467_13
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_010467_13
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010467_13
Specimen euxassay_010467_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons ventricular layer Strong Regionally restricted euxassay_010467_14
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_010467_14
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010467_14
TS23: pons mantle layer Strong Single cells euxassay_010467_14
TS23: diencephalon lateral wall ventricular layer Weak Regionally restricted euxassay_010467_14
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010467_14
TS23: telencephalon mantle layer Strong Single cells euxassay_010467_14
Specimen euxassay_010467_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons ventricular layer Strong Regionally restricted euxassay_010467_15
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_010467_15
TS23: pons mantle layer Strong Single cells euxassay_010467_15
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010467_15
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010467_15
TS23: telencephalon mantle layer Strong Single cells euxassay_010467_15
Specimen euxassay_010467_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons ventricular layer Strong Regionally restricted euxassay_010467_16
TS23: pons mantle layer Strong Single cells euxassay_010467_16
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010467_16
TS23: telencephalon mantle layer Strong Single cells euxassay_010467_16
Specimen euxassay_010467_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons ventricular layer Strong Regionally restricted euxassay_010467_17
TS23: pons mantle layer Strong Single cells euxassay_010467_17
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010467_17
TS23: telencephalon mantle layer Strong Single cells euxassay_010467_17
Specimen euxassay_010467_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pons mantle layer Strong Single cells euxassay_010467_18
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010467_18
TS23: hippocampus Present euxassay_010467_18
TS23: telencephalon mantle layer Strong Single cells euxassay_010467_18
Specimen euxassay_010467_19: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010467_19
TS23: hippocampus Present euxassay_010467_19
TS23: telencephalon mantle layer Strong Single cells euxassay_010467_19
Specimen euxassay_010467_20: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010467_20
TS23: hippocampus Present euxassay_010467_20
TS23: telencephalon mantle layer Strong Single cells euxassay_010467_20
Specimen euxassay_010467_21: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_010467_21
TS23: hippocampus Present euxassay_010467_21
TS23: telencephalon mantle layer Strong Single cells euxassay_010467_21
Specimen euxassay_010467_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Single cells euxassay_010467_22
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory