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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823390
Gene symbol: Barhl1
Gene name: BarH like homeobox 1
Probe: T55009
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_019648_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019648_01
Specimen euxassay_019648_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019648_02
Specimen euxassay_019648_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019648_03
Specimen euxassay_019648_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019648_04
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019648_04
TS23: medulla oblongata alar plate marginal layer Strong Regionally restricted euxassay_019648_04
Specimen euxassay_019648_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019648_05
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019648_05
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_019648_05
TS23: medulla oblongata alar plate marginal layer Strong Regionally restricted euxassay_019648_05
Specimen euxassay_019648_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019648_06
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019648_06
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_019648_06
TS23: intermediate grey horn Strong Regionally restricted euxassay_019648_06
TS23: medulla oblongata alar plate marginal layer Strong Regionally restricted euxassay_019648_06
TS23: medulla oblongata basal plate marginal layer Strong Regionally restricted euxassay_019648_06
Specimen euxassay_019648_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019648_07
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019648_07
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_019648_07
TS23: intermediate grey horn Moderate Regionally restricted euxassay_019648_07
TS23: medulla oblongata alar plate marginal layer Strong Regionally restricted euxassay_019648_07
TS23: medulla oblongata basal plate marginal layer Strong Regionally restricted euxassay_019648_07
Specimen euxassay_019648_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019648_08
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019648_08
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_019648_08
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_019648_08
TS23: intermediate grey horn Strong Regionally restricted euxassay_019648_08
TS23: medulla oblongata basal plate marginal layer Strong Regionally restricted euxassay_019648_08
TS23: medulla oblongata alar plate marginal layer Strong Regionally restricted euxassay_019648_08
Specimen euxassay_019648_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019648_09
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019648_09
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_019648_09
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_019648_09
TS23: intermediate grey horn Strong Regionally restricted euxassay_019648_09
TS23: medulla oblongata alar plate marginal layer Strong Regionally restricted euxassay_019648_09
TS23: medulla oblongata basal plate marginal layer Strong Regionally restricted euxassay_019648_09
Specimen euxassay_019648_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019648_10
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019648_10
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_019648_10
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_019648_10
TS23: intermediate grey horn Strong Regionally restricted euxassay_019648_10
TS23: medulla oblongata alar plate marginal layer Strong Regionally restricted euxassay_019648_10
TS23: medulla oblongata basal plate marginal layer Strong Regionally restricted euxassay_019648_10
Specimen euxassay_019648_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019648_11
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019648_11
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_019648_11
TS23: intermediate grey horn Strong Regionally restricted euxassay_019648_11
TS23: medulla oblongata alar plate marginal layer Strong Regionally restricted euxassay_019648_11
TS23: medulla oblongata basal plate marginal layer Strong Regionally restricted euxassay_019648_11
Specimen euxassay_019648_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019648_12
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019648_12
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_019648_12
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_019648_12
TS23: intermediate grey horn Strong Regionally restricted euxassay_019648_12
TS23: medulla oblongata alar plate marginal layer Strong Regionally restricted euxassay_019648_12
TS23: medulla oblongata basal plate marginal layer Strong Regionally restricted euxassay_019648_12
Specimen euxassay_019648_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019648_13
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019648_13
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_019648_13
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_019648_13
TS23: intermediate grey horn Strong Regionally restricted euxassay_019648_13
TS23: medulla oblongata alar plate marginal layer Strong Regionally restricted euxassay_019648_13
TS23: medulla oblongata basal plate marginal layer Strong Regionally restricted euxassay_019648_13
Specimen euxassay_019648_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019648_14
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019648_14
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_019648_14
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_019648_14
TS23: intermediate grey horn Strong Regionally restricted euxassay_019648_14
TS23: medulla oblongata alar plate marginal layer Strong Regionally restricted euxassay_019648_14
TS23: medulla oblongata basal plate marginal layer Strong Regionally restricted euxassay_019648_14
Specimen euxassay_019648_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019648_15
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019648_15
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_019648_15
TS23: intermediate grey horn Strong Regionally restricted euxassay_019648_15
TS23: medulla oblongata alar plate marginal layer Strong Regionally restricted euxassay_019648_15
TS23: medulla oblongata basal plate marginal layer Strong Regionally restricted euxassay_019648_15
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_019648_15
Specimen euxassay_019648_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019648_16
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019648_16
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_019648_16
TS23: intermediate grey horn Strong Regionally restricted euxassay_019648_16
TS23: medulla oblongata alar plate marginal layer Moderate Regionally restricted euxassay_019648_16
TS23: medulla oblongata basal plate marginal layer Moderate Regionally restricted euxassay_019648_16
Specimen euxassay_019648_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019648_17
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019648_17
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_019648_17
TS23: intermediate grey horn Strong Regionally restricted euxassay_019648_17
TS23: medulla oblongata alar plate marginal layer Moderate Regionally restricted euxassay_019648_17
TS23: medulla oblongata basal plate marginal layer Moderate Regionally restricted euxassay_019648_17
Specimen euxassay_019648_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019648_18
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019648_18
TS23: intermediate grey horn Strong Regionally restricted euxassay_019648_18
Specimen euxassay_019648_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019648_19
Specimen euxassay_019648_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019648_20
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory