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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823288
Gene symbol: Atcay
Gene name: ataxia, cerebellar, Cayman type
Probe: MGC clone 56757
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_004136_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon Strong Regionally restricted euxassay_004136_01
TS23: neural retina Strong Regionally restricted euxassay_004136_01
Specimen euxassay_004136_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon Strong Regionally restricted euxassay_004136_02
TS23: hindbrain Strong Regionally restricted euxassay_004136_02
TS23: neural retina Strong Regionally restricted euxassay_004136_02
TS23: trigeminal ganglion Strong Regionally restricted euxassay_004136_02
TS23: facial ganglion Strong Regionally restricted euxassay_004136_02
TS23: stomach Moderate Spotted euxassay_004136_02
Specimen euxassay_004136_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindbrain Strong Regionally restricted euxassay_004136_03
TS23: telencephalon Strong Regionally restricted euxassay_004136_03
TS23: neural retina Strong Regionally restricted euxassay_004136_03
TS23: facial ganglion Strong Regionally restricted euxassay_004136_03
TS23: trigeminal ganglion Strong Regionally restricted euxassay_004136_03
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_004136_03
TS23: stomach Moderate Spotted euxassay_004136_03
Specimen euxassay_004136_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon Strong Regionally restricted euxassay_004136_04
TS23: midbrain Strong Regionally restricted euxassay_004136_04
TS23: hindbrain Strong Regionally restricted euxassay_004136_04
TS23: dorsal root ganglion Strong Regionally restricted euxassay_004136_04
TS23: facial ganglion Strong Regionally restricted euxassay_004136_04
TS23: trigeminal ganglion Strong Regionally restricted euxassay_004136_04
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_004136_04
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_004136_04
TS23: stomach Moderate Spotted euxassay_004136_04
Specimen euxassay_004136_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon Strong Regionally restricted euxassay_004136_05
TS23: hindbrain Strong Regionally restricted euxassay_004136_05
TS23: midbrain Strong Regionally restricted euxassay_004136_05
TS23: dorsal root ganglion Strong Regionally restricted euxassay_004136_05
TS23: cervical ganglion Strong Regionally restricted euxassay_004136_05
TS23: facial ganglion Strong Regionally restricted euxassay_004136_05
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_004136_05
TS23: trigeminal ganglion Strong Regionally restricted euxassay_004136_05
TS23: vagus ganglion Strong Regionally restricted euxassay_004136_05
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_004136_05
TS23: stomach Moderate Spotted euxassay_004136_05
Specimen euxassay_004136_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon Strong Regionally restricted euxassay_004136_06
TS23: hindbrain Strong Regionally restricted euxassay_004136_06
TS23: midbrain Strong Regionally restricted euxassay_004136_06
TS23: diencephalon Strong Regionally restricted euxassay_004136_06
TS23: spinal cord Strong Regionally restricted euxassay_004136_06
TS23: dorsal root ganglion Strong Regionally restricted euxassay_004136_06
TS23: cervical ganglion Strong Regionally restricted euxassay_004136_06
TS23: cervico-thoracic ganglion Strong Regionally restricted euxassay_004136_06
TS23: trigeminal ganglion Strong Regionally restricted euxassay_004136_06
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_004136_06
TS23: stomach Moderate Spotted euxassay_004136_06
Specimen euxassay_004136_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon Strong Regionally restricted euxassay_004136_07
TS23: diencephalon Strong Regionally restricted euxassay_004136_07
TS23: hindbrain Strong Regionally restricted euxassay_004136_07
TS23: midbrain Strong Regionally restricted euxassay_004136_07
TS23: spinal cord Strong Regionally restricted euxassay_004136_07
TS23: dorsal root ganglion Strong Regionally restricted euxassay_004136_07
TS23: cervico-thoracic ganglion Strong Regionally restricted euxassay_004136_07
TS23: trigeminal ganglion Strong Regionally restricted euxassay_004136_07
TS23: midgut Moderate Spotted euxassay_004136_07
TS23: stomach Moderate Spotted euxassay_004136_07
Specimen euxassay_004136_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon Strong Regionally restricted euxassay_004136_08
TS23: telencephalon Strong Regionally restricted euxassay_004136_08
TS23: hindbrain Strong Regionally restricted euxassay_004136_08
TS23: midbrain Strong Regionally restricted euxassay_004136_08
TS23: spinal cord Strong Regionally restricted euxassay_004136_08
TS23: dorsal root ganglion Strong Regionally restricted euxassay_004136_08
TS23: thoracic ganglion Strong Regionally restricted euxassay_004136_08
TS23: trigeminal ganglion Strong Regionally restricted euxassay_004136_08
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004136_08
TS23: stomach Strong Spotted euxassay_004136_08
TS23: midgut Strong Spotted euxassay_004136_08
Specimen euxassay_004136_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon Strong Regionally restricted euxassay_004136_09
TS23: telencephalon Strong Regionally restricted euxassay_004136_09
TS23: hindbrain Strong Regionally restricted euxassay_004136_09
TS23: midbrain Strong Regionally restricted euxassay_004136_09
TS23: spinal cord Strong Regionally restricted euxassay_004136_09
TS23: dorsal root ganglion Strong Regionally restricted euxassay_004136_09
TS23: thoracic ganglion Strong Regionally restricted euxassay_004136_09
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004136_09
TS23: stomach Strong Spotted euxassay_004136_09
TS23: midgut Strong Spotted euxassay_004136_09
Specimen euxassay_004136_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon Strong Regionally restricted euxassay_004136_10
TS23: telencephalon Strong Regionally restricted euxassay_004136_10
TS23: hindbrain Strong Regionally restricted euxassay_004136_10
TS23: midbrain Strong Regionally restricted euxassay_004136_10
TS23: spinal cord Strong Regionally restricted euxassay_004136_10
TS23: dorsal root ganglion Strong Regionally restricted euxassay_004136_10
TS23: thoracic ganglion Strong Regionally restricted euxassay_004136_10
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004136_10
TS23: stomach Strong Spotted euxassay_004136_10
TS23: midgut Strong Spotted euxassay_004136_10
Specimen euxassay_004136_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon Strong Regionally restricted euxassay_004136_11
TS23: telencephalon Strong Regionally restricted euxassay_004136_11
TS23: hindbrain Strong Regionally restricted euxassay_004136_11
TS23: midbrain Strong Regionally restricted euxassay_004136_11
TS23: spinal cord Strong Regionally restricted euxassay_004136_11
TS23: dorsal root ganglion Strong Regionally restricted euxassay_004136_11
TS23: thoracic ganglion Strong Regionally restricted euxassay_004136_11
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004136_11
TS23: midgut Strong Spotted euxassay_004136_11
Specimen euxassay_004136_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon Strong Regionally restricted euxassay_004136_12
TS23: telencephalon Strong Regionally restricted euxassay_004136_12
TS23: hindbrain Strong Regionally restricted euxassay_004136_12
TS23: midbrain Strong Regionally restricted euxassay_004136_12
TS23: spinal cord Strong Regionally restricted euxassay_004136_12
TS23: dorsal root ganglion Strong Regionally restricted euxassay_004136_12
TS23: thoracic ganglion Strong Regionally restricted euxassay_004136_12
TS23: cervico-thoracic ganglion Strong Regionally restricted euxassay_004136_12
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004136_12
TS23: midgut Strong Spotted euxassay_004136_12
TS23: tongue Strong Spotted euxassay_004136_12
Specimen euxassay_004136_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon Strong Regionally restricted euxassay_004136_13
TS23: telencephalon Strong Regionally restricted euxassay_004136_13
TS23: hindbrain Strong Regionally restricted euxassay_004136_13
TS23: midbrain Strong Regionally restricted euxassay_004136_13
TS23: spinal cord Strong Regionally restricted euxassay_004136_13
TS23: dorsal root ganglion Strong Regionally restricted euxassay_004136_13
TS23: cervico-thoracic ganglion Strong Regionally restricted euxassay_004136_13
TS23: thoracic ganglion Strong Regionally restricted euxassay_004136_13
TS23: midgut Strong Spotted euxassay_004136_13
TS23: tongue Strong Spotted euxassay_004136_13
Specimen euxassay_004136_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon Strong Regionally restricted euxassay_004136_14
TS23: telencephalon Strong Regionally restricted euxassay_004136_14
TS23: hindbrain Strong Regionally restricted euxassay_004136_14
TS23: midbrain Strong Regionally restricted euxassay_004136_14
TS23: spinal cord Strong Regionally restricted euxassay_004136_14
TS23: dorsal root ganglion Strong Regionally restricted euxassay_004136_14
TS23: thoracic ganglion Strong Regionally restricted euxassay_004136_14
TS23: cervical ganglion Strong Regionally restricted euxassay_004136_14
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004136_14
TS23: midgut Moderate Spotted euxassay_004136_14
TS23: tongue Strong Spotted euxassay_004136_14
Specimen euxassay_004136_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon Strong Regionally restricted euxassay_004136_15
TS23: telencephalon Strong Regionally restricted euxassay_004136_15
TS23: hindbrain Strong Regionally restricted euxassay_004136_15
TS23: midbrain Strong Regionally restricted euxassay_004136_15
TS23: spinal cord Strong Regionally restricted euxassay_004136_15
TS23: dorsal root ganglion Strong Regionally restricted euxassay_004136_15
TS23: thoracic ganglion Strong Regionally restricted euxassay_004136_15
TS23: trigeminal ganglion Strong Regionally restricted euxassay_004136_15
TS23: vagus ganglion Strong Regionally restricted euxassay_004136_15
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_004136_15
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004136_15
TS23: midgut Moderate Spotted euxassay_004136_15
Specimen euxassay_004136_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon Strong Regionally restricted euxassay_004136_16
TS23: telencephalon Strong Regionally restricted euxassay_004136_16
TS23: hindbrain Strong Regionally restricted euxassay_004136_16
TS23: midbrain Strong Regionally restricted euxassay_004136_16
TS23: spinal cord Strong Regionally restricted euxassay_004136_16
TS23: dorsal root ganglion Strong Regionally restricted euxassay_004136_16
TS23: trigeminal ganglion Strong Regionally restricted euxassay_004136_16
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_004136_16
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_004136_16
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004136_16
TS23: midgut Moderate Spotted euxassay_004136_16
Specimen euxassay_004136_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon Strong Regionally restricted euxassay_004136_17
TS23: telencephalon Strong Regionally restricted euxassay_004136_17
TS23: hindbrain Strong Regionally restricted euxassay_004136_17
TS23: midbrain Strong Regionally restricted euxassay_004136_17
TS23: spinal cord Strong Regionally restricted euxassay_004136_17
TS23: dorsal root ganglion Strong Regionally restricted euxassay_004136_17
TS23: trigeminal ganglion Strong Regionally restricted euxassay_004136_17
TS23: facial ganglion Strong Regionally restricted euxassay_004136_17
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_004136_17
TS23: olfactory epithelium Weak Regionally restricted euxassay_004136_17
TS23: midgut Moderate Spotted euxassay_004136_17
Specimen euxassay_004136_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon Strong Regionally restricted euxassay_004136_18
TS23: telencephalon Strong Regionally restricted euxassay_004136_18
TS23: hindbrain Strong Regionally restricted euxassay_004136_18
TS23: midbrain Strong Regionally restricted euxassay_004136_18
TS23: dorsal root ganglion Strong Regionally restricted euxassay_004136_18
TS23: trigeminal ganglion Strong Regionally restricted euxassay_004136_18
TS23: facial ganglion Strong Regionally restricted euxassay_004136_18
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_004136_18
TS23: olfactory epithelium Weak Regionally restricted euxassay_004136_18
TS23: midgut Moderate Spotted euxassay_004136_18
Specimen euxassay_004136_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon Strong Regionally restricted euxassay_004136_19
TS23: telencephalon Strong Regionally restricted euxassay_004136_19
TS23: hindbrain Strong Regionally restricted euxassay_004136_19
TS23: trigeminal ganglion Strong Regionally restricted euxassay_004136_19
TS23: facial ganglion Strong Regionally restricted euxassay_004136_19
Specimen euxassay_004136_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon Strong Regionally restricted euxassay_004136_20
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_004136_20
Specimen euxassay_004136_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon Strong Regionally restricted euxassay_004136_21
TS23: neural retina Moderate Regionally restricted euxassay_004136_21
Specimen euxassay_004136_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon Strong Regionally restricted euxassay_004136_22
TS23: neural retina Moderate Regionally restricted euxassay_004136_22
Specimen euxassay_004136_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon Strong Regionally restricted euxassay_004136_23
TS23: neural retina Strong Regionally restricted euxassay_004136_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory