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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823079
Gene symbol: Alcam
Gene name: activated leukocyte cell adhesion molecule
Probe: MGC clone 27910
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_003463_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cornea epithelium Strong Regionally restricted euxassay_003463_01
TS23: stomach Strong Regionally restricted euxassay_003463_01
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003463_01
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003463_01
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_003463_01
Specimen euxassay_003463_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cornea epithelium Strong Regionally restricted euxassay_003463_02
TS23: stomach Strong Regionally restricted euxassay_003463_02
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003463_02
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_003463_02
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003463_02
Specimen euxassay_003463_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_003463_03
TS23: cornea epithelium Strong Regionally restricted euxassay_003463_03
TS23: stomach Strong Regionally restricted euxassay_003463_03
TS23: extrinsic ocular muscle Moderate Regionally restricted euxassay_003463_03
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003463_03
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_003463_03
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003463_03
Specimen euxassay_003463_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_003463_04
TS23: lung Strong Regionally restricted euxassay_003463_04
TS23: cornea epithelium Strong Regionally restricted euxassay_003463_04
TS23: stomach Strong Regionally restricted euxassay_003463_04
TS23: extrinsic ocular muscle Moderate Regionally restricted euxassay_003463_04
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003463_04
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_003463_04
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_003463_04
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_003463_04
Specimen euxassay_003463_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_003463_05
TS23: lung Strong Regionally restricted euxassay_003463_05
TS23: stomach Moderate Regionally restricted euxassay_003463_05
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003463_05
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_003463_05
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_003463_05
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_003463_05
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_003463_05
Specimen euxassay_003463_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_003463_06
TS23: lung Strong Regionally restricted euxassay_003463_06
TS23: submandibular gland primordium Strong Regionally restricted euxassay_003463_06
TS23: stomach Moderate Regionally restricted euxassay_003463_06
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003463_06
TS23: saccule Strong Regionally restricted euxassay_003463_06
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_003463_06
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_003463_06
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_003463_06
TS23: pons mantle layer Moderate Regionally restricted euxassay_003463_06
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_003463_06
Specimen euxassay_003463_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_003463_07
TS23: lung Strong Regionally restricted euxassay_003463_07
TS23: submandibular gland primordium Strong Regionally restricted euxassay_003463_07
TS23: stomach Weak Regionally restricted euxassay_003463_07
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_003463_07
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003463_07
TS23: saccule Strong Regionally restricted euxassay_003463_07
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_003463_07
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_003463_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_003463_07
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_003463_07
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_003463_07
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_003463_07
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_003463_07
Specimen euxassay_003463_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_003463_08
TS23: lung Strong Regionally restricted euxassay_003463_08
TS23: submandibular gland primordium Strong Regionally restricted euxassay_003463_08
TS23: stomach Weak Regionally restricted euxassay_003463_08
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_003463_08
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003463_08
TS23: saccule Strong Regionally restricted euxassay_003463_08
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_003463_08
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_003463_08
TS23: pons mantle layer Moderate Regionally restricted euxassay_003463_08
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_003463_08
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_003463_08
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_003463_08
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_003463_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_003463_08
Specimen euxassay_003463_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_003463_09
TS23: lung Strong Regionally restricted euxassay_003463_09
TS23: submandibular gland primordium Strong Regionally restricted euxassay_003463_09
TS23: stomach Weak Regionally restricted euxassay_003463_09
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_003463_09
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003463_09
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_003463_09
TS23: pons mantle layer Moderate Regionally restricted euxassay_003463_09
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_003463_09
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_003463_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_003463_09
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_003463_09
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_003463_09
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_003463_09
Specimen euxassay_003463_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_003463_10
TS23: lung Strong Regionally restricted euxassay_003463_10
TS23: submandibular gland primordium Strong Regionally restricted euxassay_003463_10
TS23: stomach Weak Regionally restricted euxassay_003463_10
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_003463_10
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003463_10
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_003463_10
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_003463_10
TS23: pons mantle layer Moderate Regionally restricted euxassay_003463_10
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_003463_10
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_003463_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_003463_10
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_003463_10
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_003463_10
Specimen euxassay_003463_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_003463_11
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_003463_11
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003463_11
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_003463_11
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_003463_11
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_003463_11
TS23: pons mantle layer Moderate Regionally restricted euxassay_003463_11
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_003463_11
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_003463_11
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_003463_11
Specimen euxassay_003463_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_003463_12
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003463_12
TS23: bladder Moderate Regionally restricted euxassay_003463_12
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_003463_12
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003463_12
TS23: pons ventricular layer Strong Regionally restricted euxassay_003463_12
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_003463_12
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_003463_12
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_003463_12
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_003463_12
Specimen euxassay_003463_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_003463_13
TS23: trachea Strong Regionally restricted euxassay_003463_13
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003463_13
TS23: bladder Moderate Regionally restricted euxassay_003463_13
TS23: urethra Moderate Regionally restricted euxassay_003463_13 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: nucleus pulposus Moderate Regionally restricted euxassay_003463_13
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_003463_13
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003463_13
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_003463_13
TS23: pons mantle layer Moderate Regionally restricted euxassay_003463_13
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_003463_13
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_003463_13
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_003463_13
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_003463_13
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_003463_13
Specimen euxassay_003463_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_003463_14
TS23: trachea Strong Regionally restricted euxassay_003463_14
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003463_14
TS23: bladder Moderate Regionally restricted euxassay_003463_14
TS23: urethra Strong Regionally restricted euxassay_003463_14 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: nucleus pulposus Moderate Regionally restricted euxassay_003463_14
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_003463_14
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003463_14
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_003463_14
TS23: pons mantle layer Moderate Regionally restricted euxassay_003463_14
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_003463_14
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_003463_14
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_003463_14
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_003463_14
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_003463_14
Specimen euxassay_003463_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_003463_15
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003463_15
TS23: bladder Weak Regionally restricted euxassay_003463_15
TS23: urethra Moderate Regionally restricted euxassay_003463_15 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_003463_15
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003463_15
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_003463_15
TS23: pons mantle layer Moderate Regionally restricted euxassay_003463_15
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_003463_15
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_003463_15
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_003463_15
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_003463_15
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_003463_15
Specimen euxassay_003463_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_003463_16
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_003463_16
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003463_16
TS23: bladder Weak Regionally restricted euxassay_003463_16
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_003463_16
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_003463_16
TS23: pons mantle layer Moderate Regionally restricted euxassay_003463_16
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_003463_16
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_003463_16
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_003463_16
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_003463_16
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_003463_16
Specimen euxassay_003463_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_003463_17
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_003463_17
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_003463_17
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003463_17
TS23: saccule Strong Regionally restricted euxassay_003463_17
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_003463_17
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_003463_17
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_003463_17
TS23: pons mantle layer Moderate Regionally restricted euxassay_003463_17
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_003463_17
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_003463_17
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_003463_17
Specimen euxassay_003463_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_003463_18
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_003463_18
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003463_18
TS23: saccule Strong Regionally restricted euxassay_003463_18
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_003463_18
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_003463_18
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_003463_18
TS23: pons mantle layer Moderate Regionally restricted euxassay_003463_18
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_003463_18
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_003463_18
Specimen euxassay_003463_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_003463_19
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_003463_19
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003463_19
TS23: saccule Strong Regionally restricted euxassay_003463_19
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_003463_19
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_003463_19
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_003463_19
Specimen euxassay_003463_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_003463_20
TS23: lung Strong Regionally restricted euxassay_003463_20
TS23: submandibular gland primordium Strong Regionally restricted euxassay_003463_20
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003463_20
TS23: saccule Strong Regionally restricted euxassay_003463_20
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_003463_20
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003463_20
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_003463_20
Specimen euxassay_003463_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_003463_21
TS23: lung Strong Regionally restricted euxassay_003463_21
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_003463_21
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003463_21
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_003463_21
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_003463_21
Specimen euxassay_003463_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_003463_22
TS23: lung Strong Regionally restricted euxassay_003463_22
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003463_22
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_003463_22
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003463_22
Specimen euxassay_003463_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_003463_23
TS23: lung Strong Regionally restricted euxassay_003463_23
TS23: extrinsic ocular muscle Moderate Regionally restricted euxassay_003463_23
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003463_23
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_003463_23
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003463_23
Specimen euxassay_003463_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_003463_24
TS23: lung Strong Regionally restricted euxassay_003463_24
TS23: cornea epithelium Strong Regionally restricted euxassay_003463_24
TS23: extrinsic ocular muscle Moderate Regionally restricted euxassay_003463_24
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003463_24
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_003463_24
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_003463_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory