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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4822693
Gene symbol: Bmerb1
Gene name: bMERB domain containing 1
Probe: MGC clone 31632
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_000995_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000995_01
TS23: cornea stroma Strong Regionally restricted euxassay_000995_01
Specimen euxassay_000995_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000995_02
TS23: cornea stroma Strong Regionally restricted euxassay_000995_02
Specimen euxassay_000995_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_000995_03
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000995_03
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000995_03
TS23: cornea stroma Strong Regionally restricted euxassay_000995_03
Specimen euxassay_000995_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_000995_04
TS23: facial ganglion Moderate Regionally restricted euxassay_000995_04
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000995_04
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000995_04
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_000995_04
TS23: cornea stroma Weak Regionally restricted euxassay_000995_04
Specimen euxassay_000995_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_000995_05
TS23: facial ganglion Moderate Regionally restricted euxassay_000995_05
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000995_05
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000995_05
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_000995_05
Specimen euxassay_000995_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_000995_06
TS23: facial ganglion Moderate Regionally restricted euxassay_000995_06
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000995_06
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000995_06
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_000995_06
TS23: pons mantle layer Moderate Regionally restricted euxassay_000995_06
TS23: midbrain mantle layer Moderate Uniform euxassay_000995_06
Specimen euxassay_000995_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_000995_07
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_000995_07
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_000995_07
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000995_07
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000995_07
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_000995_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_000995_07
TS23: midbrain mantle layer Moderate Uniform euxassay_000995_07
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_000995_07
TS23: medulla oblongata alar plate mantle layer Moderate Uniform euxassay_000995_07
Specimen euxassay_000995_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_000995_08
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_000995_08
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_000995_08
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000995_08
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000995_08
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_000995_08
TS23: pons mantle layer Moderate Regionally restricted euxassay_000995_08
TS23: midbrain mantle layer Moderate Uniform euxassay_000995_08
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_000995_08
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_000995_08
TS23: medulla oblongata alar plate mantle layer Moderate Uniform euxassay_000995_08
TS23: medulla oblongata basal plate mantle layer Moderate Uniform euxassay_000995_08
Specimen euxassay_000995_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vagus ganglion Moderate Regionally restricted euxassay_000995_09
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_000995_09
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_000995_09
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_000995_09
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000995_09
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000995_09
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_000995_09
TS23: pons mantle layer Moderate Regionally restricted euxassay_000995_09
TS23: midbrain mantle layer Moderate Uniform euxassay_000995_09
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_000995_09
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_000995_09
TS23: medulla oblongata alar plate mantle layer Moderate Uniform euxassay_000995_09
TS23: medulla oblongata basal plate mantle layer Moderate Uniform euxassay_000995_09
TS23: tail dorsal root ganglion Strong Regionally restricted euxassay_000995_09
Specimen euxassay_000995_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_000995_10
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_000995_10
TS23: cervical ganglion Weak Regionally restricted euxassay_000995_10
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_000995_10
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000995_10
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000995_10
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_000995_10
TS23: pons mantle layer Moderate Regionally restricted euxassay_000995_10
TS23: midbrain mantle layer Moderate Uniform euxassay_000995_10
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_000995_10
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_000995_10
TS23: medulla oblongata alar plate mantle layer Moderate Uniform euxassay_000995_10
TS23: medulla oblongata basal plate mantle layer Moderate Uniform euxassay_000995_10
TS23: spinal cord mantle layer Moderate Uniform euxassay_000995_10
TS23: tail dorsal root ganglion Strong Regionally restricted euxassay_000995_10
Specimen euxassay_000995_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_000995_11
TS23: cervico-thoracic ganglion Weak Regionally restricted euxassay_000995_11
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_000995_11
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000995_11
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000995_11
TS23: pons mantle layer Moderate Regionally restricted euxassay_000995_11
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_000995_11
TS23: midbrain mantle layer Moderate Uniform euxassay_000995_11
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_000995_11
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_000995_11
TS23: medulla oblongata alar plate mantle layer Moderate Uniform euxassay_000995_11
TS23: medulla oblongata basal plate mantle layer Moderate Uniform euxassay_000995_11
TS23: spinal cord mantle layer Moderate Uniform euxassay_000995_11
TS23: tail dorsal root ganglion Strong Regionally restricted euxassay_000995_11
Specimen euxassay_000995_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_000995_12
TS23: cervico-thoracic ganglion Weak Regionally restricted euxassay_000995_12
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_000995_12
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000995_12
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000995_12
TS23: pons mantle layer Moderate Regionally restricted euxassay_000995_12
TS23: midbrain mantle layer Moderate Uniform euxassay_000995_12
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_000995_12
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_000995_12
TS23: medulla oblongata alar plate mantle layer Moderate Uniform euxassay_000995_12
TS23: medulla oblongata basal plate mantle layer Moderate Uniform euxassay_000995_12
TS23: spinal cord mantle layer Moderate Uniform euxassay_000995_12
TS23: tail dorsal root ganglion Strong Regionally restricted euxassay_000995_12
TS23: glans of male genital tubercle Moderate Regionally restricted euxassay_000995_12
Specimen euxassay_000995_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_000995_13
TS23: thoracic ganglion Weak Regionally restricted euxassay_000995_13
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_000995_13
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000995_13
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000995_13
TS23: pons mantle layer Moderate Regionally restricted euxassay_000995_13
TS23: midbrain mantle layer Moderate Uniform euxassay_000995_13
TS23: midbrain marginal layer Moderate Uniform euxassay_000995_13
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_000995_13
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_000995_13
TS23: medulla oblongata basal plate mantle layer Moderate Uniform euxassay_000995_13
TS23: medulla oblongata alar plate mantle layer Moderate Uniform euxassay_000995_13
TS23: spinal cord mantle layer Moderate Uniform euxassay_000995_13
TS23: tail dorsal root ganglion Strong Regionally restricted euxassay_000995_13
Specimen euxassay_000995_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic ganglion Weak Regionally restricted euxassay_000995_14
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000995_14
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000995_14
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_000995_14
TS23: pons mantle layer Moderate Regionally restricted euxassay_000995_14
TS23: midbrain mantle layer Moderate Uniform euxassay_000995_14
TS23: midbrain marginal layer Moderate Uniform euxassay_000995_14
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_000995_14
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_000995_14
TS23: medulla oblongata basal plate mantle layer Moderate Uniform euxassay_000995_14
TS23: medulla oblongata alar plate mantle layer Moderate Uniform euxassay_000995_14
TS23: spinal cord mantle layer Moderate Uniform euxassay_000995_14
Specimen euxassay_000995_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic ganglion Weak Regionally restricted euxassay_000995_15
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_000995_15
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000995_15
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000995_15
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_000995_15
TS23: pons mantle layer Moderate Regionally restricted euxassay_000995_15
TS23: midbrain mantle layer Moderate Uniform euxassay_000995_15
TS23: midbrain marginal layer Moderate Uniform euxassay_000995_15
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_000995_15
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_000995_15
TS23: medulla oblongata alar plate mantle layer Moderate Uniform euxassay_000995_15
TS23: medulla oblongata basal plate mantle layer Moderate Uniform euxassay_000995_15
TS23: spinal cord mantle layer Moderate Uniform euxassay_000995_15
Specimen euxassay_000995_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_000995_16
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000995_16
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000995_16
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_000995_16
TS23: pons mantle layer Moderate Regionally restricted euxassay_000995_16
TS23: midbrain mantle layer Moderate Uniform euxassay_000995_16
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_000995_16
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_000995_16
TS23: medulla oblongata alar plate mantle layer Moderate Uniform euxassay_000995_16
TS23: medulla oblongata basal plate mantle layer Moderate Uniform euxassay_000995_16
TS23: spinal cord mantle layer Moderate Uniform euxassay_000995_16
Specimen euxassay_000995_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_000995_17
TS23: thoracic ganglion Weak Regionally restricted euxassay_000995_17
TS23: cervico-thoracic ganglion Weak Regionally restricted euxassay_000995_17
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_000995_17
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000995_17
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000995_17
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_000995_17
TS23: pons mantle layer Moderate Regionally restricted euxassay_000995_17
TS23: midbrain mantle layer Moderate Uniform euxassay_000995_17
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_000995_17
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_000995_17
TS23: medulla oblongata alar plate mantle layer Moderate Uniform euxassay_000995_17
TS23: medulla oblongata basal plate mantle layer Moderate Uniform euxassay_000995_17
TS23: spinal cord mantle layer Moderate Uniform euxassay_000995_17
TS23: tail dorsal root ganglion Strong Regionally restricted euxassay_000995_17
Specimen euxassay_000995_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_000995_18
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_000995_18
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_000995_18
TS23: cervico-thoracic ganglion Weak Regionally restricted euxassay_000995_18
TS23: cervical ganglion Weak Regionally restricted euxassay_000995_18
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_000995_18
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000995_18
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000995_18
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_000995_18
TS23: pons mantle layer Moderate Regionally restricted euxassay_000995_18
TS23: midbrain mantle layer Moderate Uniform euxassay_000995_18
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_000995_18
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_000995_18
TS23: medulla oblongata alar plate mantle layer Moderate Uniform euxassay_000995_18
TS23: medulla oblongata basal plate mantle layer Moderate Uniform euxassay_000995_18
TS23: spinal cord mantle layer Moderate Uniform euxassay_000995_18
TS23: tail dorsal root ganglion Strong Regionally restricted euxassay_000995_18
Specimen euxassay_000995_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_000995_19
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_000995_19
TS23: vagus ganglion Moderate Regionally restricted euxassay_000995_19
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_000995_19
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_000995_19
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000995_19
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000995_19
TS23: pons mantle layer Moderate Regionally restricted euxassay_000995_19
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_000995_19
TS23: midbrain mantle layer Moderate Uniform euxassay_000995_19
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_000995_19
TS23: medulla oblongata alar plate mantle layer Moderate Uniform euxassay_000995_19
TS23: medulla oblongata basal plate mantle layer Moderate Uniform euxassay_000995_19
TS23: tail dorsal root ganglion Strong Regionally restricted euxassay_000995_19
Specimen euxassay_000995_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_000995_20
TS23: trigeminal ganglion Weak Regionally restricted euxassay_000995_20
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_000995_20
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_000995_20
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000995_20
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000995_20
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_000995_20
TS23: midbrain mantle layer Moderate Uniform euxassay_000995_20
TS23: tail dorsal root ganglion Strong Regionally restricted euxassay_000995_20
Specimen euxassay_000995_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_000995_21
TS23: facial ganglion Weak Regionally restricted euxassay_000995_21
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000995_21
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000995_21
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_000995_21
Specimen euxassay_000995_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_000995_22
TS23: facial ganglion Weak Regionally restricted euxassay_000995_22
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000995_22
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000995_22
TS23: metencephalon rest of alar plate mantle layer Moderate Regionally restricted euxassay_000995_22
Specimen euxassay_000995_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_000995_23
TS23: facial ganglion Weak Regionally restricted euxassay_000995_23
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_000995_23
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_000995_23
TS23: cornea stroma Weak Regionally restricted euxassay_000995_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory