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Gene Expression Data
Assay Details
Assay
Reference: J:157819 Shimogori T, et al., A genomic atlas of mouse hypothalamic development. Nat Neurosci. 2010;13(6):767-75
Assay type: RNA in situ
MGI Accession ID: MGI:4450792
Gene symbol: Igf2bp1
Gene name: insulin-like growth factor 2 mRNA binding protein 1
Probe: UI-M-CG0p-bdf-d-07-0-UI.s1
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen S9j: embryonic day 11.5 (more )
Note: Double labeled: blue - Igf2bp1; brown - Shh (assay MGI:4452154).
Structure Level Pattern Image Note
TS19: diencephalon Present Regionally restricted S9_j Expression is present in progenitor cells in the prethalamus and hypothalamus.

Specimen S9k: embryonic day 12.5 (more )
Note: Double labeled: blue - Igf2bp1; brown - Shh (assay MGI:4452154).
Structure Level Pattern Image Note
TS20: thalamus Present Regionally restricted S9_k Expression is present in progenitor cells in the prethalamus.
TS20: hypothalamus Present Regionally restricted S9_k Expression is present in progenitor cells.

Specimen S9l: embryonic day 14.5 (more )
Note: Double labeled: blue - Igf2bp1; brown - Shh (assay MGI:4452154).
Structure Level Pattern Image Note
TS22: cerebral cortex Present Regionally restricted S9_l Expression is present in progenitor cells.

Specimen S9m: embryonic day 16.5 (more )
Note: Double labeled: blue - Igf2bp1; brown - Shh (assay MGI:4452154).
Structure Level Pattern Image Note
TS24: cerebral cortex Present Regionally restricted S9_m Expression is present in progenitors cells.

Specimen Igf2bp1 - E11.5: embryonic day 11.5 (more )
Note: Specimen was also hybridized with a fluorescein-labeled Shh probe (MGI:2110655; detected with TBT/BCIP). The results are reported in Supp. Table 4, whose legend includes a key to the abbreviations used and more fully details the regions examined.
Structure Level Pattern Image Note
TS19: diencephalon lateral wall mantle layer Ambiguous Igf2bp1-Shh E11.5-coronal Staining is either absent or ubiquitous in the mantle zone of the dorsal thalamus, prethalamus, dorsal and ventral POAs, the PVH, VMH and ARH nuclei, the AVH, the anterior and posterior IDs, the premam, mam and supramam zones and the TT.
TS19: diencephalon lateral wall ventricular layer Very strong Non-Uniform Igf2bp1-Shh E11.5-coronal Staining is very strong in the VZ of dorsal thalamus, prethalamus, dorsal & ventral POAs, AVH, anterior & posterior IDs, premam, mam & supramam zones & TT & moderate in VMH nucleus. Staining is either absent or ubiquitous in the VZ of PVH & ARH nuclei.
TS19: telencephalon mantle layer Ambiguous Igf2bp1-Shh E11.5-coronal Staining is either absent or ubiquitous in the postmitotic neurons in the intermediate zone and cortical plate of the cerebral cortex and in the mantle zone of the ganglionic eminences.
TS19: telencephalon ventricular layer Very strong Igf2bp1-Shh E11.5-coronal There is very strong staining in the ventricular zone of the cerebral cortex and the ganglionic eminences.

Specimen Igf2bp1 - E12.5: embryonic day 12.5 (more )
Note: Specimen was also hybridized with a fluorescein-labeled Shh probe (MGI:2110655; detected with TBT/BCIP). The results are reported in Supp. Table 4, whose legend includes a key to the abbreviations used and more fully details the regions examined.
Structure Level Pattern Image Note
TS20: cerebral cortex intermediate zone Ambiguous Igf2bp1-Shh E12.5-coronal Staining is either absent or ubiquitous in the postmitotic neurons in the intermediate zone of the cerebral cortex.
TS20: cerebral cortex ventricular layer Moderate Igf2bp1-Shh E12.5-coronal There is moderate staining in the ventricular zone of the cerebral cortex.
TS20: cortical plate Ambiguous Igf2bp1-Shh E12.5-coronal Staining is either absent or ubiquitous in the postmitotic neurons in the cortical plate of the cerebral cortex.
TS20: diencephalon mantle layer Strong Non-Uniform Igf2bp1-Shh E12.5-coronal There is strong staining in the mantle zone of the supramam zone. Staining is either absent or ubiquitous in the mantle zone of the premam and mam zones and the TT.
TS20: diencephalon ventricular layer Strong Non-Uniform Igf2bp1-Shh E12.5-coronal There is strong staining in the ventricular zone of the premam and mam zones and the TT. Staining is either absent or ubiquitous in the ventricular zone of the supramam zone.
TS20: ganglionic eminence Moderate Non-Uniform Igf2bp1-Shh E12.5-coronal There is moderate staining in the ventricular zone of the ganglionic eminences. Staining is either absent or ubiquitous in the mantle zone of the ganglionic eminences.
TS20: hypothalamus mantle layer Ambiguous Igf2bp1-Shh E12.5-coronal Staining is either absent or ubiquitous in the mantle zone of the dorsal and ventral POAs, the PVH, VMH and ARH nuclei, the AVH and anterior and posterior IDs.
TS20: hypothalamus ventricular layer Strong Non-Uniform Igf2bp1-Shh E12.5-coronal There is strong staining in the ventricular zone of the anterior and posterior ID and moderate staining in the dorsal and ventral POAs and the AVH. Staining is either absent or ubiquitous in the ventricular zone of the PVH, VMH and ARH nuclei.
TS20: thalamus mantle layer Ambiguous Igf2bp1-Shh E12.5-coronal Staining is either absent or ubiquitous in the mantle zone of the dorsal thalamus and prethalamus.
TS20: thalamus ventricular layer Moderate Igf2bp1-Shh E12.5-coronal There is moderate staining in the ventricular zone of the dorsal thalamus and prethalamus.

Specimen Igf2bp1 - E14.5: embryonic day 14.5 (more )
Note: Specimen was also hybridized with a fluorescein-labeled Shh probe (MGI:2110655; detected with TBT/BCIP). The results are reported in Supp. Table 4, whose legend includes a key to the abbreviations used and more fully details the regions examined.
Structure Level Pattern Image Note
TS22: cerebral cortex intermediate zone Moderate Scattered Igf2bp1-Shh E14.5-coronal There is moderate, scattered staining in the postmitotic neurons in the intermediate zone of the cerebral cortex.
TS22: cerebral cortex ventricular layer Strong Igf2bp1-Shh E14.5-coronal There is strong staining in the ventricular zone of the cerebral cortex.
TS22: cortical plate Moderate Scattered Igf2bp1-Shh E14.5-coronal There is moderate, scattered staining in the postmitotic neurons in the cortical plate of the cerebral cortex.
TS22: diencephalon mantle layer Ambiguous Igf2bp1-Shh E14.5-coronal Staining is either absent or ubiquitous in the mantle zone of the premam, mam and supramam zones and the TT.
TS22: diencephalon ventricular layer Ambiguous Igf2bp1-Shh E14.5-coronal Staining is either absent or ubiquitous in the ventricular zone of the premam, mam and supramam zones and the TT.
TS22: ganglionic eminence Moderate Non-Uniform Igf2bp1-Shh E14.5-coronal There is moderate staining in the ventricular zone of the ganglionic eminences and weak, scattered staining in the mantle zone of the ganglionic eminences.
TS22: hypothalamus mantle layer Ambiguous Igf2bp1-Shh E14.5-coronal Staining is either absent or ubiquitous in the mantle zone of the dorsal and ventral POAs, the PVH, VMH and ARH nuclei, the AVH and anterior and posterior IDs.
TS22: hypothalamus ventricular layer Weak Non-Uniform Igf2bp1-Shh E14.5-coronal There is weak staining in the ventricular zone of the ventral POA. Staining is either absent or ubiquitous in the ventricular zone of the dorsal POAs the PVH, VMH and ARH nuclei, the AVH and anterior and posterior IDs.
TS22: thalamus mantle layer Weak Non-Uniform Igf2bp1-Shh E14.5-coronal There is weak staining in the mantle zone of the dorsal thalamus. Staining is either absent or ubiquitous in the mantle zone of the prethalamus.
TS22: thalamus ventricular layer Ambiguous Igf2bp1-Shh E14.5-coronal Staining is either absent or ubiquitous in the ventricular zone of the dorsal thalamus and prethalamus.

Specimen Igf2bp1 - E16.5: embryonic day 16.5 (more )
Note: Specimen was also hybridized with a fluorescein-labeled Shh probe (MGI:2110655; detected with TBT/BCIP). The results are reported in Supp. Table 4, whose legend includes a key to the abbreviations used and more fully details the regions examined.
Structure Level Pattern Image Note
TS24: cerebral cortex intermediate zone Moderate Scattered Igf2bp1-Shh E16.5-coronal There is moderate, scattered staining in the postmitotic neurons in the intermediate zone of the cerebral cortex.
TS24: cerebral cortex ventricular layer Strong Igf2bp1-Shh E16.5-coronal There is strong staining in the ventricular zone of the cerebral cortex.
TS24: cortical plate Moderate Scattered Igf2bp1-Shh E16.5-coronal There is moderate, scattered staining in the postmitotic neurons in the cortical plate of the cerebral cortex.
TS24: diencephalon mantle layer Ambiguous Igf2bp1-Shh E16.5-coronal Staining is either absent or ubiquitous in the mantle zone of the premam, mam and supramam zones.
TS24: diencephalon ventricular layer Weak Non-Uniform Igf2bp1-Shh E16.5-coronal There is weak staining in the ventricular zone of the premam and mam zones. Staining is either absent or ubiquitous in the ventricular zone of the supramam zone.
TS24: ganglionic eminence Weak Non-Uniform Igf2bp1-Shh E16.5-coronal There is weak, scattered staining in the mantle zone of the ganglionic eminences. Staining is either absent or ubiquitous in the ventricular zone of the ganglionic eminences.
TS24: hypothalamus mantle layer Ambiguous Igf2bp1-Shh E16.5-coronal Staining is either absent or ubiquitous in the mantle zone of the dorsal and ventral POAs, the PVH, SCH, DMH, VMH and ARH nuclei, the AVH, the DAH and the PH.
TS24: hypothalamus ventricular layer Weak Non-Uniform Igf2bp1-Shh E16.5-coronal There is weak staining in the ventricular zone of the ARH nucleus. Staining is either absent or ubiquitous in the ventricular zone of the dorsal and ventral POAs, the PVH, SCH, DMH and VMH nuclei, the AVH, the DAH and the PH.
TS24: thalamus mantle layer Weak Non-Uniform Igf2bp1-Shh E16.5-coronal There is weak staining in the mantle zone of the dorsal thalamus. Staining is either absent or ubiquitous in the mantle zone of the prethalamus.
TS24: thalamus ventricular layer Ambiguous Igf2bp1-Shh E16.5-coronal Staining is either absent or ubiquitous in the ventricular zone of the dorsal thalamus and prethalamus.


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last database update
04/23/2024
MGI 6.23
The Jackson Laboratory