About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:127438 Berti C, et al., TRIM9 is specifically expressed in the embryonic and adult nervous system. Mech Dev. 2002 May;113(2):159-62
Assay type: RNA in situ
MGI Accession ID: MGI:3778939
Gene symbol: Trim9
Gene name: tripartite motif-containing 9
Probe: Trim9 probe
Probe preparation: Antisense RNA
Results
Specimen Not shown: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: embryo Absent

Specimen 1A: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: central nervous system Present Regionally restricted 1A Expression is present in the ventral part of the entire neuroepithelium.
TS15: dorsal root ganglion Present 1A

Specimen 1B: embryonic day 11.5 (more )
Note: This is a sagittal section.
Structure Level Pattern Image Note
TS20: central nervous system Present Regionally restricted 1B Expression is present in the ventral part of the entire neuroepithelium.
TS20: dorsal root ganglion Present 1B
TS20: telencephalon Present Regionally restricted 1B Expression is present in the caudal and medial part.

Specimen 1C: embryonic day 13.5 (more )
Note: This is a sagittal section.
Structure Level Pattern Image Note
TS22: thalamus Strong Regionally restricted 1C Expression is present in the dorsal thalamus.
TS22: hindbrain Strong 1C
TS22: midbrain Strong 1C
TS22: spinal cord Strong 1C
TS22: cortical plate Present Regionally restricted 1C Expression is present in a small differentiating zone above the ventricular neuroepithelium, the primordial plexiform layer.
TS22: hippocampus Present 1C Expression is present in the differentiating field and in the area of the fimbria.

Specimen 1D: embryonic day 15.5 (more )
Note: This is a sagittal section.
Structure Level Pattern Image Note
TS23: thalamus Strong Regionally restricted 1D Expression is present in the dorsal thalamus.
TS23: hindbrain Strong 1D
TS23: midbrain Strong 1D
TS23: spinal cord Strong 1D
TS23: cerebral cortex subventricular zone Present 1D
TS23: cortical plate Present 1D
TS23: cerebral cortex intermediate zone Absent 1D
TS23: cerebral cortex ventricular layer Absent 1D
TS23: hippocampus Present 1D Expression is present in the differentiating field and in the area of the fimbria hippocampi.

Specimen 2A: embryonic day 13.5 (more )
Note: This is a transversal section.
Structure Level Pattern Image Note
TS22: cerebellum Present 2A
TS22: medulla oblongata Present 2A
TS22: pons Present 2A
TS22: thalamus Present 2A
TS22: cortical plate Present Regionally restricted 2A Expression is present in a small differentiating zone above the ventricular neuroepithelium, the primordial plexiform layer.

Specimen 2B: embryonic day 13.5 (more )
Note: This is a sagittal section.
Structure Level Pattern Image Note
TS22: cortical plate Present Regionally restricted 2B Expression is present in a small differentiating zone above the ventricular neuroepithelium, the primordial plexiform layer.
TS22: thalamus Present Regionally restricted 2B Expression is present in the dorsal thalamus.
TS22: hippocampus Present 2B Expression is present in the fimbria hippocampi.

Specimen 2C: embryonic day 15.5 (more )
Note: This is a transversal section. Figs. 2E and 2F are higher magnification images of the section in Fig. 2C.
Structure Level Pattern Image Note
TS23: medulla oblongata Present 2C
TS23: pons Present 2C
TS23: telencephalon Present 2C
TS23: thalamus Present 2C
TS23: cerebellum Present Diffuse 2C There is a diffused signal in the primorida of the cerebellum.
TS23: cerebral cortex subventricular zone Present 2C , 2E , 2F Expression is present in the lateral (2E) and frontal (2F) region.
TS23: cortical plate Present 2C , 2E , 2F Expression is present in the lateral (2E) and frontal (2F) region.
TS23: cerebral cortex intermediate zone Absent 2F , 2E , 2C
TS23: cerebral cortex ventricular layer Absent 2F , 2E , 2C
TS23: hippocampus Present 2E , 2C Expression is present in the differentiating field.
TS23: diencephalon ventricular layer Strong 2C Expression is observed in the ventricular layer surrounding the third ventricle.

Specimen 2D: embryonic day 15.5 (more )
Note: This is a sagittal section.
Structure Level Pattern Image Note
TS23: cerebral cortex Present 2D
TS23: hippocampus Present 2D Expression is present in the fimbria hippocampi.
TS23: thalamus Strong Regionally restricted 2D Expression is present in the dorsal thalamus.

Specimen 3A/C: embryonic day 13.5 (more )
Note: This is a sagittal section.
Structure Level Pattern Image Note
TS22: tectum Present Regionally restricted 3A Expression is present in the external layers.
TS22: midbrain tegmentum Present Diffuse 3A
TS22: cerebellum Present Diffuse 3A There is a diffused signal in the primorida of the cerebellum.
TS22: medulla oblongata ventricular layer Present 3C Expression is particularly strong in the medial part.
TS22: pons ventricular layer Present 3C Expression is particularly strong in the medial part.

Specimen 3B/D: embryonic day 15.5 (more )
Note: This is a sagittal section.
Structure Level Pattern Image Note
TS23: tectum Present Regionally restricted 3B Expression is present in the external layers.
TS23: midbrain tegmentum Present Regionally restricted 3B Expression is restricted to the ventricular layer lining the aqueduct.
TS23: medulla oblongata ventricular layer Present 3D Expression is particularly strong in the medial part.
TS23: pons ventricular layer Present 3D Expression is particularly strong in the medial part.

Specimen 3E: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS22: spinal cord ventricular layer Strong Regionally restricted 3E Expression is basal; it is higher ventrally and lower dorsally.
TS22: spinal cord floor plate Strong 3E

Specimen 3F: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord ventricular layer Strong Regionally restricted 3F Expression is basal; it is higher ventrally and lower dorsally.
TS23: spinal cord floor plate Strong 3F
TS23: dorsal root ganglion Present 3F

Specimen 3G: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS20: dorsal root ganglion Present 3G

Specimen 3H: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS22: dorsal root ganglion Present 3H

Specimen 4A: postnatal day 21 (more )
Note: This is a sagittal section.
Structure Level Pattern Image Note
TS28: cerebellum Purkinje cell layer Strong 4A

Specimen 4B: postnatal day 21 (more )
Structure Level Pattern Image Note
TS28: cerebellum Purkinje cell layer Strong 4B

Specimen 5C: postnatal adult (more )
Structure Level Pattern Image Note
TS28: hippocampus pyramidal cell layer Present 5C

Specimen 5D: postnatal adult (more )
Structure Level Pattern Image Note
TS28: entorhinal cortex Present 5D
TS28: piriform cortex Present 5D


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
04/23/2024
MGI 6.23
The Jackson Laboratory