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Thap6 Pseudogene Detail
Summary
  • Symbol
    Thap6
  • Name
    THAP domain containing 6
  • Synonyms
    4930534K21Rik
  • Feature Type
    pseudogene
  • IDs
    MGI:1922436
    NCBI Gene: 381650
  • Alliance
    gene page
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:92111192-92119925 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 45.62 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    43 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922436
 pseudogene Chr5:92110741-92119996 (+)
129S1/SvImJ MGP_129S1SvImJ_G0039871
 pseudogene Chr5:93095525-93122049 (+)
A/J MGP_AJ_G0039877
 pseudogene Chr5:89420205-89429730 (+)
AKR/J MGP_AKRJ_G0039802
 pseudogene Chr5:92338533-92349458 (+)
BALB/cJ MGP_BALBcJ_G0039855
 pseudogene Chr5:90304306-90314091 (+)
C3H/HeJ MGP_C3HHeJ_G0039500
 pseudogene Chr5:92744534-92755131 (+)
C57BL/6NJ MGP_C57BL6NJ_G0040421
 pseudogene Chr5:96814560-96826723 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0037015
 pseudogene Chr5:85071002-85080826 (+)
CAST/EiJ MGP_CASTEiJ_G0038606
 pseudogene Chr5:92117744-92129790 (+)
CBA/J MGP_CBAJ_G0039468
 pseudogene Chr5:100145006-100154416 (+)
DBA/2J MGP_DBA2J_G0039673
 pseudogene Chr5:89465646-89475257 (+)
FVB/NJ MGP_FVBNJ_G0039631
 pseudogene Chr5:88317268-88326933 (+)
LP/J MGP_LPJ_G0039710
 pseudogene Chr5:93480058-93490269 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0039627
 pseudogene Chr5:105091551-105102373 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0040520
 pseudogene Chr5:91873449-91883110 (+)
PWK/PhJ MGP_PWKPhJ_G0038279
 pseudogene Chr5:88523797-88535263 (+)
SPRET/EiJ MGP_SPRETEiJ_G0038023
 pseudogene Chr5:91229028-91239487 (+)
WSB/EiJ MGP_WSBEiJ_G0038837
 pseudogene Chr5:92328231-92339366 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    7
  • Chemically induced (other)
    1
  • Gene trapped
    4
  • Radiation induced
    1
  • Spontaneous
    1
  • Genomic Mutations
    3 involving Thap6
  • Find Mice (IMSR)
    1 strains or lines available
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    735
  • Tissues
    29
  • cDNA Data
    7
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    31
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000102644 Ensembl Gene Model | MGI Sequence Detail 8734 C57BL/6J ±  kb
transcript ENSMUST00000191860 Ensembl | MGI Sequence Detail 3151 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 4
Other
Accession IDs
less
MGI:2140886
References
more
  • Summaries
    All 22
    Developmental Gene Expression 1
    Phenotypes 8
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory