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Macroh2a3 Pseudogene Detail
Summary
  • Symbol
    Macroh2a3
  • Name
    macroH2A.3 histone
  • Synonyms
    4933432H23Rik, H2afy3
  • Feature Type
    pseudogene
  • IDs
    MGI:1914802
    NCBI Gene: 67552
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:62090070-62091181 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 26.42 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    32 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914802
 pseudogene Chr15:62089390-62091300 (-)
129S1/SvImJ MGP_129S1SvImJ_G0011191
 pseudogene Chr15:61578110-61579221 (-)
A/J MGP_AJ_G0011181
 pseudogene Chr15:59162548-59163659 (-)
AKR/J MGP_AKRJ_G0011141
 pseudogene Chr15:60814602-60815713 (-)
BALB/cJ MGP_BALBcJ_G0011148
 pseudogene Chr15:59357732-59358843 (-)
C3H/HeJ MGP_C3HHeJ_G0011048
 pseudogene Chr15:60946969-60948080 (-)
C57BL/6NJ MGP_C57BL6NJ_G0011446
 pseudogene Chr15:63898093-63899204 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0010028
 pseudogene Chr15:56239323-56240441 (-)
CAST/EiJ MGP_CASTEiJ_G0010873
 pseudogene Chr15:61600633-61603691 (-)
CBA/J MGP_CBAJ_G0011029
 pseudogene Chr15:66150808-66151919 (-)
DBA/2J MGP_DBA2J_G0011076
 pseudogene Chr15:59035398-59036509 (-)
FVB/NJ MGP_FVBNJ_G0011076
 pseudogene Chr15:58082915-58084501 (-)
LP/J MGP_LPJ_G0011167
 pseudogene Chr15:61459561-61460672 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0011070
 pseudogene Chr15:71129654-71130765 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0011421
 pseudogene Chr15:61207267-61208378 (-)
PWK/PhJ MGP_PWKPhJ_G0010745
 pseudogene Chr15:59098673-59100439 (-)
SPRET/EiJ MGP_SPRETEiJ_G0010565
 pseudogene Chr15:60985773-60986893 (-)
WSB/EiJ MGP_WSBEiJ_G0010918
 pseudogene Chr15:61232861-61233972 (-)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    25 phenotype references
  • All Mutations and Alleles
    7
  • Chemically induced (other)
    3
  • Gene trapped
    1
  • Radiation induced
    2
  • Transposon induced
    1
  • Genomic Mutations
    6 involving Macroh2a3
  • Find Mice (IMSR)
    0 strains or lines available
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    730
  • Tissues
    15
  • cDNA Data
    4
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    26
  • RefSeq
    1
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000101167 Ensembl Gene Model | MGI Sequence Detail 1112 C57BL/6J ±  kb
transcript ENSMUST00000151919 Ensembl | MGI Sequence Detail 1112 Not Applicable  
polypeptide Q9D3V6 UniProt | EBI | MGI Sequence Detail 382 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 1
References
more
  • Summaries
    All 41
    Developmental Gene Expression 1
    Diseases 1
    Phenotypes 25
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:345376 Filipescu D, et al., MacroH2A restricts inflammatory gene expression in melanoma cancer-associated fibroblasts by coordinating chromatin looping. Nat Cell Biol. 2023 Sep;25(9):1332-1345
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory