Tex16 MGI Mouse Gene Detail - MGI:1890545

Tex16 Gene Detail

Symbol

Tex16
Name

testis expressed gene 16

Feature Type

protein coding gene
IDs

MGI:1890545
NCBI Gene: 83556
Alliance

gene page
Transcription Start Sites

2 TSS

Sequence Map

ChrX:110804655-111159053 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome X, 48.76 cM
Mapping Data

3 experiments

SNPs within 2kb

1340 from dbSNP Build 142
Strain Annotations

3

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1890545	protein coding gene	ChrX:110804655-111159053 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0033352	protein coding gene	ChrX:105380765-105496350 (+)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0035807	protein coding gene	ChrX:120932457-120971329 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Human Ortholog

TEX16P, testis expressed 16, pseudogene

Vertebrate Orthologs

1

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

TEX16P, testis expressed 16, pseudogene
Links

HGNC:37957

NCBI Gene ID: 100499435
Chr Location

Xq21.1; chrX:84717747-84762308 (+) GRCh38

MGI Vertebrate Homology

Tex16 stringent orthology
1 human;1 mouse
HCOP

vertebrate homology predictions: TEX16P

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Phenotype Summary

4 phenotype references

All Mutations and Alleles

4
Endonuclease-mediated

1
Targeted

3
Incidental Mutations

APF , CvDC
Find Mice (IMSR)

6 strains or lines available

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All GO Annotations

5
GO References

1

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

8

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

35
RefSeq

12
UniProt

6
CCDS

CCDS30358.1, CCDS57772.1

Ensembl

ENSMUSG00000034555 (Evidence), ENSMUSG00000079460 (Evidence)
NCBI Gene

83556

			Length	Strain/Species	Flank
genomic	83556	NCBI Gene Model \| MGI Sequence Detail	354399	C57BL/6J	± kb
transcript	NM_001417263	RefSeq \| MGI Sequence Detail	13177	C57BL/6
polypeptide	NP_001404192	RefSeq \| MGI Sequence Detail	2450	C57BL/6

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UniProt

6 Sequences
InterPro Domains

IPR039171 Pre-mRNA-splicing factor Cwc2/Slt11

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All nucleic 9

cDNA 8

Primer pair 1

Microarray probesets 3

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MGI:1918280, MGI:3782927

Summaries

All 24

Gene Ontology 1

Phenotypes 4
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for Tex16:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161886	ChrX:110804648-110804659 (+)	-1 bp
Tssr161887	ChrX:110854093-110854107 (+)	49,445 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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